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MW544066.1__QSJ04033.1__X__00057

Bact-Vir

MW544066.1__QSJ04033.1__X__00057

Identity

Accession:
MW544066 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Triduovirus› Salmonella_phage_vB_SalP_TR2

TaxID: 2812854

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06069.16 best PerC 39.2 9.40e-10 85.4% 62.2%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ijqA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.81 56.0 4.51e-01 70.7% 49.0%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 47.0 5.38e-01 80.5% 80.6%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 46.0 4.49e-01 79.3% 53.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 47.0 5.55e-01 84.1% 89.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 51.0 5.12e-01 70.7% 98.8%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.74 48.0 4.24e-01 85.4% 47.0%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 50.0 4.70e-01 85.4% 60.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 59.0 6.27e-01 93.9% 97.3%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.69 49.0 5.28e-01 85.4% 84.5%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 47.0 4.34e-01 70.7% 89.6%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.69 47.0 3.99e-01 70.7% 45.5%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.69 47.0 4.16e-01 85.4% 49.6%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 46.0 4.76e-01 82.9% 73.1%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.67 58.0 5.33e-01 93.9% 73.5%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.68e-01 85.4% 70.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 47.0 4.77e-01 85.4% 75.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.66 54.0 5.58e-01 96.3% 93.5%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 47.0 4.66e-01 85.4% 71.8%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 46.0 3.16e-01 84.1% 22.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.64 41.0 4.55e-01 81.7% 81.5%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 47.0 4.11e-01 76.8% 79.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 51.0 4.87e-01 87.8% 95.7%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 4.96e-01 84.1% 90.4%
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.60 41.0 2.60e-01 70.7% 32.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 54.0 4.71e-01 98.8% 90.2%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 44.0 3.98e-01 95.1% 56.8%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 42.0 3.80e-01 73.2% 83.9%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 43.0 3.95e-01 75.6% 77.4%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.58 48.0 4.52e-01 89.0% 81.8%
2mgxA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.57 51.0 4.34e-01 100.0% 61.8%
7smtA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.57 51.0 4.02e-01 100.0% 73.6%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 40.0 3.71e-01 74.4% 74.5%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 42.0 3.95e-01 80.5% 70.3%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 2.80e-01 70.7% 73.5%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.54 39.0 3.08e-01 75.6% 55.7%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 49.0 3.94e-01 97.6% 64.7%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.54 47.0 4.31e-01 98.8% 87.0%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.53 45.0 3.75e-01 92.7% 85.6%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 37.0 3.40e-01 78.0% 76.8%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 32.0 3.52e-01 85.4% 83.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3476812 375.1.1.233 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_IFT122_C 0.79 64.0 4.20e-01 85.4% 93.9%
3339561 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 50.0 4.68e-01 85.4% 56.0%
3294437 5086.1.1.110 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.74 49.0 5.05e-01 85.4% 70.0%
1769448 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.74 48.0 4.15e-01 85.4% 43.7%
4146694 192.29.1.277 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin 0.74 48.0 5.38e-01 84.1% 84.6%
4249161 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 49.0 5.46e-01 85.4% 87.7%
3996074 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 50.0 3.46e-01 70.7% 65.0%
3251379 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 48.0 4.75e-01 84.1% 64.7%
3880178 192.8.1.92 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CUPID 0.72 48.0 4.88e-01 85.4% 70.0%
3257797 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 47.0 3.35e-01 85.4% 23.8%
4124331 192.15.1.76 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.71 46.0 4.14e-01 82.9% 49.1%
3885579 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 49.0 3.52e-01 70.7% 31.4%
4184330 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.71 47.0 4.39e-01 85.4% 56.0%
3698336 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 47.0 4.67e-01 84.1% 65.9%
4033238 101.1.2.804 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27113 0.70 47.0 3.67e-01 85.4% 32.6%
3585791 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.70 46.0 4.78e-01 84.1% 73.3%
5074963 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 56.0 6.08e-01 92.7% 100.0%
3805159 4099.1.1.11 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 0.65 43.0 4.05e-01 84.1% 56.0%
3958099 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 49.0 3.42e-01 80.5% 43.2%
3737877 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 47.0 3.70e-01 76.8% 54.5%
3975400 109.4.1.1555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_19 0.64 55.0 3.53e-01 91.5% 25.2%
3941516 109.4.1.1555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_19 0.63 54.0 3.82e-01 91.5% 36.6%
4569984 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.61 48.0 3.06e-01 86.6% 77.0%
3289119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 3.09e-01 85.4% 26.0%
1268315 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.60 54.0 4.68e-01 98.8% 89.4%
4978274 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.60 49.0 4.41e-01 89.0% 71.3%
3261464 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.60 55.0 4.94e-01 100.0% 87.3%
3221760 604.1.1.140 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 0.59 52.0 5.14e-01 93.9% 100.0%
4512994 2007.6.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.59 48.0 3.51e-01 86.6% 43.3%
3168103 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.59 54.0 5.14e-01 100.0% 91.6%
3718498 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.59 53.0 5.11e-01 96.3% 93.3%
3314132 376.1.6.10 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.58 48.0 3.93e-01 90.2% 73.3%
3808540 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.57 48.0 3.90e-01 90.2% 70.0%
3473142 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 51.0 4.29e-01 100.0% 85.7%
4988605 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.56 50.0 3.18e-01 96.3% 23.7%
3880244 603.2.1.24 ↗ alpha bundles › STAT-like › STAT › STAT › TBCA_PH 0.56 48.0 3.79e-01 90.2% 92.9%
None — 0.56 47.0 2.93e-01 95.1% 26.2%
3619200 192.15.1.76 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID 0.55 49.0 3.97e-01 97.6% 52.3%
3494979 109.4.1.655 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_N 0.54 43.0 3.16e-01 90.2% 54.9%
3518386 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.54 46.0 4.84e-01 92.7% 100.0%
3274546 7516.1.1.79 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.54 46.0 2.84e-01 100.0% 52.7%
3482686 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 45.0 4.37e-01 93.9% 97.8%