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MW560978.1__QSM00593.1__X__00017

Bact-Vir

MW560978.1__QSM00593.1__X__00017

Identity

Accession:
MW560978 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oceanospirillum_phage_vB_OliS_GJ44

TaxID: 2736267

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 117-245
PDB
Domain cluster: rep: NC_013021.1__YP_003084169.1__PSS2_gp025__00025__D1-19_169-256
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 41.0 4.07e-01 86.8% 63.4%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 39.0 3.96e-01 86.8% 65.4%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 39.0 3.96e-01 86.0% 64.9%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.60 28.0 3.87e-01 72.9% 88.9%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.58 29.0 3.19e-01 97.7% 56.0%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 43.0 4.26e-01 76.0% 92.5%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.56 42.0 3.98e-01 78.3% 78.4%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.94e-01 83.7% 92.6%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.90e-01 84.5% 91.7%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 4.04e-01 72.1% 89.2%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 37.0 3.63e-01 90.7% 66.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.78e-01 84.5% 92.4%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 36.0 3.56e-01 71.3% 97.8%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.22e-01 77.5% 66.4%
1a8dA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.62e-01 89.1% 89.8%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 37.0 3.28e-01 77.5% 74.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3076016 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.70 60.0 6.29e-01 100.0% 99.1%
2537708 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.66 59.0 5.88e-01 100.0% 94.0%
4172287 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.63 46.0 4.24e-01 96.1% 59.4%
4009137 274.1.1.12 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.61 49.0 4.49e-01 89.9% 64.7%
5075303 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.60 51.0 4.17e-01 90.7% 88.9%
3635423 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.60 52.0 4.57e-01 92.2% 91.4%
3643800 813.1.1.1 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone 0.60 44.0 3.63e-01 76.0% 84.4%
5052250 12.3.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.56 45.0 3.45e-01 85.3% 96.9%
3399255 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.53 37.0 3.95e-01 89.1% 81.7%
3294603 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.52 40.0 3.72e-01 82.2% 87.9%
3588474 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.51 36.0 3.80e-01 72.9% 99.2%
3367730 5.1.1.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › FBA_1 0.50 36.0 3.30e-01 73.6% 78.2%
3915628 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 40.0 2.75e-01 84.5% 94.3%
D2 medium residues 407-460
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.73 50.0 3.71e-01 72.2% 63.0%
4g4sO01 3.40.50.12120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone 0.52 42.0 2.96e-01 96.3% 50.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3465537 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.56 39.0 2.53e-01 74.1% 32.2%
4027117 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 40.0 3.95e-01 79.6% 72.4%
3937317 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.54 41.0 4.24e-01 96.3% 88.0%
3212935 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.54 39.0 3.83e-01 85.2% 71.7%