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MW570730.1__QSM00750.1__YerA41_049__00049

Bact-Vir

MW570730.1__QSM00750.1__YerA41_049__00049

Identity

Accession:
MW570730 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-78
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 56.0 5.78e-01 100.0% 84.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 58.0 6.14e-01 98.5% 98.3%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.63e-01 100.0% 81.1%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.59e-01 100.0% 78.2%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.70 63.0 5.77e-01 100.0% 84.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.50e-01 98.5% 84.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.93e-01 100.0% 95.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.96e-01 98.5% 95.5%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.15e-01 98.5% 68.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.48e-01 97.1% 89.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.99e-01 100.0% 96.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.35e-01 98.5% 95.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.53e-01 98.5% 96.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 52.0 5.36e-01 100.0% 95.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.13e-01 98.5% 91.9%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.47e-01 95.6% 100.0%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 56.0 5.49e-01 100.0% 98.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.66e-01 100.0% 75.3%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 4.63e-01 100.0% 76.7%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 5.12e-01 92.6% 100.0%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 53.0 4.90e-01 98.5% 87.2%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.99e-01 89.7% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.89e-01 100.0% 86.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 3.76e-01 97.1% 55.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.88e-01 95.6% 90.0%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 52.0 3.76e-01 100.0% 51.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.82e-01 100.0% 82.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 43.0 4.28e-01 82.4% 77.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 50.0 3.87e-01 100.0% 73.0%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 51.0 3.56e-01 100.0% 38.2%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 50.0 4.15e-01 100.0% 60.6%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.74e-01 77.9% 86.9%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.73e-01 100.0% 69.8%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.34e-01 79.4% 73.6%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 51.0 4.99e-01 100.0% 94.6%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 48.0 4.21e-01 100.0% 69.2%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 46.0 3.66e-01 98.5% 78.7%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.54 48.0 4.67e-01 100.0% 88.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 48.0 4.32e-01 100.0% 84.2%
2k5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.88e-01 80.9% 86.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.78e-01 83.8% 77.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.12e-01 100.0% 81.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.96e-01 83.8% 86.4%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.94e-01 86.8% 94.9%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.42e-01 83.8% 64.1%
1ik3A04 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.16e-01 85.3% 81.3%
2gf6A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 37.0 3.14e-01 83.8% 78.9%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.59e-01 100.0% 93.8%
4170983 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 64.0 6.20e-01 100.0% 82.7%
3484478 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.75 57.0 6.03e-01 98.5% 91.7%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.74 58.0 5.93e-01 100.0% 87.7%
3481344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 60.0 6.12e-01 98.5% 92.3%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.57e-01 100.0% 51.0%
3511278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.10e-01 100.0% 71.4%
3794445 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 60.0 5.67e-01 95.6% 76.2%
3211367 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 60.0 5.42e-01 100.0% 67.8%
3370389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 59.0 6.06e-01 100.0% 93.8%
3523918 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.72 56.0 5.73e-01 100.0% 87.7%
3579728 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 59.0 5.85e-01 100.0% 85.7%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.71 56.0 5.55e-01 100.0% 82.9%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 6.11e-01 100.0% 100.0%
1144827 4.1.1.79 beta barrels › SH3 › SH3 › SH3 › DUF3601 0.70 63.0 5.79e-01 100.0% 85.4%
4542692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.89e-01 100.0% 83.5%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.70 63.0 5.74e-01 100.0% 82.2%
3473172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.72e-01 100.0% 81.2%
3389432 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 56.0 5.49e-01 98.5% 80.0%
4405469 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 62.0 5.58e-01 100.0% 73.7%
3990859 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 52.0 5.74e-01 86.8% 100.0%
4396206 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.69 45.0 4.79e-01 100.0% 76.7%
3625449 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.71e-01 86.8% 100.0%
3842363 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.69 61.0 5.22e-01 100.0% 63.6%
3770803 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 61.0 5.22e-01 100.0% 63.6%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.80e-01 100.0% 90.0%
3842361 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.68 61.0 5.48e-01 100.0% 80.0%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 53.0 4.34e-01 98.5% 46.7%
142250 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.68 56.0 5.76e-01 100.0% 93.8%
25836 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 57.0 5.63e-01 100.0% 86.1%
4001172 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 55.0 5.52e-01 98.5% 85.7%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 51.0 5.37e-01 100.0% 91.7%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 53.0 3.83e-01 100.0% 30.8%
3879172 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 56.0 5.78e-01 98.5% 93.8%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.06e-01 100.0% 81.5%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 53.0 4.72e-01 100.0% 60.0%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 55.0 5.69e-01 98.5% 96.8%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.11e-01 98.5% 81.5%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.67 52.0 5.37e-01 100.0% 87.7%
3575435 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.67 59.0 5.23e-01 95.6% 97.9%
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.67 58.0 5.74e-01 100.0% 91.4%
3797477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.91e-01 98.5% 98.5%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 50.0 5.14e-01 100.0% 83.1%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 51.0 4.58e-01 100.0% 58.9%
3205517 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 58.0 5.59e-01 94.1% 85.3%
3787905 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 53.0 5.33e-01 94.1% 84.3%
3995092 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.67 57.0 4.09e-01 100.0% 32.5%
3025579 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 53.0 5.56e-01 95.6% 100.0%
3259841 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.76e-01 98.5% 94.3%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.66 48.0 4.82e-01 100.0% 77.1%
4971532 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.89e-01 100.0% 77.1%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.49e-01 100.0% 54.5%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.65 51.0 5.13e-01 100.0% 82.9%
5075469 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.65 48.0 4.90e-01 100.0% 83.1%
3995675 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 51.0 5.42e-01 98.5% 100.0%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.64 51.0 4.94e-01 100.0% 77.3%
2849853 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 53.0 5.42e-01 100.0% 94.0%
3485667 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.64 57.0 5.59e-01 100.0% 90.7%
4669027 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 54.0 3.70e-01 100.0% 27.1%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.86e-01 100.0% 72.9%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.63 47.0 4.83e-01 97.1% 84.6%
3434219 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.63 54.0 4.80e-01 100.0% 67.4%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 53.0 5.32e-01 97.1% 100.0%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 53.0 5.16e-01 100.0% 86.7%
3810562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.91e-01 100.0% 82.7%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 45.0 4.65e-01 100.0% 89.2%
3997935 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.60 42.0 3.68e-01 75.0% 82.9%
5043091 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 41.0 4.14e-01 100.0% 73.5%
3586284 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 53.0 5.04e-01 100.0% 87.5%
3612090 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.49e-01 92.6% 90.0%
4674170 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 52.0 4.35e-01 100.0% 56.7%
3208838 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.59 52.0 4.02e-01 100.0% 55.5%
4291404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.92e-01 97.1% 89.3%
3624306 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 51.0 4.23e-01 100.0% 65.6%
3623084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.22e-01 100.0% 54.4%
3419158 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 46.0 4.77e-01 100.0% 92.3%
3633294 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.56 49.0 3.90e-01 98.5% 53.6%
3621734 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.55 42.0 3.59e-01 86.8% 85.0%
3810742 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.34e-01 88.2% 69.0%
3470175 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.54 48.0 4.57e-01 100.0% 87.5%
4548024 1.1.17.27 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Mycop_pep_DUF31 0.52 45.0 2.81e-01 100.0% 23.2%
5023597 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 40.0 3.14e-01 98.5% 36.9%
3448558 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 43.0 2.62e-01 100.0% 70.5%
3939634 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.50 39.0 3.43e-01 91.2% 87.8%