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MW570730.1__QSM00815.1__YerA41_114__00114

Bact-Vir

MW570730.1__QSM00815.1__YerA41_114__00114

Identity

Accession:
MW570730 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-79
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.74 65.0 5.57e-01 92.8% 70.6%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.64 48.0 4.62e-01 92.8% 69.6%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 54.0 4.55e-01 94.2% 72.9%
2jrrA01 2.60.260.40 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › q5lls5 like domains 0.64 42.0 4.66e-01 98.6% 88.7%
4idhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 47.0 3.30e-01 100.0% 26.0%
4fbdA01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.62 49.0 4.21e-01 87.0% 82.5%
8onuA01 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.62 51.0 4.31e-01 89.9% 75.0%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 46.0 3.40e-01 82.6% 52.6%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 40.0 3.48e-01 97.1% 44.5%
4ar9A01 3.40.30.160 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain 0.59 35.0 2.84e-01 100.0% 28.2%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 39.0 3.33e-01 100.0% 40.3%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.69e-01 82.6% 100.0%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 49.0 3.24e-01 97.1% 45.9%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.59e-01 79.7% 74.5%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.56 44.0 4.16e-01 100.0% 72.3%
2odxA00 2.60.260.40 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › q5lls5 like domains 0.56 38.0 4.15e-01 98.6% 92.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 39.0 3.61e-01 89.9% 55.8%
2lm3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 42.0 3.05e-01 82.6% 60.0%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 47.0 3.97e-01 100.0% 74.6%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 43.0 3.52e-01 88.4% 62.9%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 36.0 3.20e-01 100.0% 44.0%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.34e-01 100.0% 43.4%
5vipB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 45.0 3.18e-01 94.2% 55.1%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 3.21e-01 100.0% 45.1%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 41.0 3.31e-01 89.9% 63.2%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.77e-01 95.7% 82.7%
6u1oA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 41.0 3.67e-01 92.8% 83.5%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 41.0 3.58e-01 100.0% 56.5%
3ozbA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 43.0 3.02e-01 98.6% 33.2%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 39.0 2.43e-01 87.0% 31.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4680318 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.73 64.0 5.80e-01 94.2% 81.1%
4023805 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 60.0 5.57e-01 89.9% 72.9%
5013019 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 47.0 5.31e-01 100.0% 94.0%
3237854 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 51.0 4.37e-01 92.8% 81.7%
4954543 2004.1.1.117 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 0.61 45.0 3.07e-01 100.0% 22.9%
3625722 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 37.0 3.91e-01 100.0% 70.0%
3735876 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 42.0 2.97e-01 76.8% 42.1%
4025559 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.59 44.0 2.75e-01 82.6% 14.3%
4999578 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 37.0 4.23e-01 100.0% 97.8%
4170121 69.1.1.11 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.59 49.0 3.79e-01 97.1% 91.8%
3988887 211.1.1.9 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_C 0.58 37.0 3.48e-01 98.6% 50.0%
3611473 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.58 40.0 2.90e-01 73.9% 32.6%
1160887 211.1.1.9 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_C 0.57 37.0 3.94e-01 98.6% 79.3%
3708366 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.56 37.0 2.84e-01 95.7% 29.4%
1544851 316.1.1.29 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Poly_A_pol_cat 0.56 41.0 2.95e-01 100.0% 26.3%
4567448 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 39.0 3.82e-01 75.4% 68.0%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 48.0 3.64e-01 97.1% 46.1%
3380722 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 43.0 2.93e-01 85.5% 26.4%
3968197 243.4.1.1 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.54 37.0 4.04e-01 79.7% 90.9%
4020860 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 46.0 3.83e-01 100.0% 80.0%
4032095 6043.1.1.6 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PF28288 0.54 42.0 4.11e-01 88.4% 89.3%
3262513 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 43.0 3.64e-01 89.9% 67.5%
3486280 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 40.0 3.02e-01 85.5% 91.5%
3465146 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 45.0 2.71e-01 100.0% 53.7%
3724547 4317.1.1.1 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.53 36.0 3.87e-01 72.5% 91.7%
3319016 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.52 44.0 3.03e-01 97.1% 34.9%
3639927 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.52 41.0 3.59e-01 88.4% 77.3%
5046420 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 37.0 3.82e-01 100.0% 81.5%
4984763 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 44.0 3.17e-01 95.7% 46.8%
3712375 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.51 36.0 3.50e-01 75.4% 92.5%
4993809 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.50 35.0 3.21e-01 73.9% 74.0%
3968143 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 32.0 2.72e-01 82.6% 36.7%
D2 high residues 104-186
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 57.0 5.99e-01 94.0% 91.8%
1qo7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 3.27e-01 98.8% 43.1%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 36.0 3.48e-01 75.9% 55.1%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 35.0 2.81e-01 85.5% 30.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 35.0 3.55e-01 77.1% 65.0%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 3.43e-01 77.1% 60.3%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 42.0 2.98e-01 83.1% 44.7%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.55 40.0 3.74e-01 77.1% 79.8%
4qa9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 2.92e-01 91.6% 44.6%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 37.0 3.61e-01 81.9% 65.3%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 4.10e-01 74.7% 93.7%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.23e-01 86.7% 48.8%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 37.0 2.96e-01 77.1% 37.0%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 2.80e-01 94.0% 40.8%
2fgtA03 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.51 37.0 3.20e-01 77.1% 54.8%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 44.0 3.58e-01 98.8% 63.7%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 40.0 3.69e-01 86.7% 75.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3297022 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.79 62.0 6.54e-01 97.6% 93.3%
6450 4023.1.1.2 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › Helic-prim_T7_N 0.74 57.0 6.04e-01 94.0% 91.8%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.68 61.0 5.83e-01 100.0% 90.5%
5053484 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 50.0 4.34e-01 92.8% 76.3%
3993494 5.1.5.42 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RMC1_N 0.58 45.0 3.07e-01 81.9% 30.5%
2130268 4099.1.1.7 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD1 0.57 35.0 3.50e-01 85.5% 58.8%
3617770 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 42.0 3.37e-01 81.9% 94.1%
3669780 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.56 47.0 3.05e-01 96.4% 40.5%
3279368 7579.1.1.97 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN 0.56 44.0 2.98e-01 89.2% 44.5%
1877353 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.55 28.0 3.64e-01 77.1% 95.1%
3853098 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 35.0 3.33e-01 85.5% 53.0%
3558284 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 36.0 3.46e-01 98.8% 57.0%
4988150 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.54 43.0 3.99e-01 97.6% 68.6%
3983134 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.52 39.0 3.69e-01 86.7% 66.0%
5063650 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.52 38.0 3.11e-01 78.3% 89.6%
3290541 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 37.0 4.12e-01 75.9% 96.9%
3666222 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.52 33.0 3.29e-01 80.7% 58.9%
4008034 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.51 39.0 3.18e-01 91.6% 41.8%