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MW578836.1__QSM01081.1__SEA_NANOSMITE_36__00036
Bact-VirMW578836.1__QSM01081.1__SEA_NANOSMITE_36__00036
Identity
- Accession:
- MW578836 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Taxonomy
TaxID: 2813164
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-45
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.86 | 71.0 | 4.91e-01 | 100.0% | 28.4% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 70.0 | 6.61e-01 | 100.0% | 79.6% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.83 | 58.0 | 5.53e-01 | 100.0% | 64.0% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 68.0 | 5.92e-01 | 100.0% | 69.1% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 69.0 | 5.78e-01 | 100.0% | 66.7% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.80 | 67.0 | 6.07e-01 | 100.0% | 69.4% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.79 | 71.0 | 4.14e-01 | 100.0% | 99.7% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.79 | 65.0 | 5.63e-01 | 100.0% | 73.0% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 66.0 | 4.26e-01 | 100.0% | 20.6% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 67.0 | 4.28e-01 | 100.0% | 20.6% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.78 | 65.0 | 5.51e-01 | 100.0% | 61.8% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.78 | 66.0 | 6.51e-01 | 100.0% | 93.5% |
| 3zgxA02 | 6.10.140.1720 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 66.0 | 5.23e-01 | 100.0% | 48.4% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.76 | 63.0 | 6.04e-01 | 100.0% | 82.4% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 63.0 | 4.03e-01 | 100.0% | 19.4% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.76 | 66.0 | 5.52e-01 | 100.0% | 61.8% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 63.0 | 6.21e-01 | 100.0% | 89.6% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 63.0 | 5.43e-01 | 100.0% | 93.2% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 62.0 | 5.25e-01 | 100.0% | 87.2% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.74 | 63.0 | 4.91e-01 | 100.0% | 55.7% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 64.0 | 5.31e-01 | 100.0% | 57.1% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.72 | 59.0 | 5.45e-01 | 100.0% | 75.0% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 58.0 | 4.82e-01 | 100.0% | 85.1% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 57.0 | 4.37e-01 | 100.0% | 37.5% |
| 5c9gA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 56.0 | 5.28e-01 | 97.7% | 78.9% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.70 | 55.0 | 5.20e-01 | 100.0% | 72.9% |
| 3f1iS00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 55.0 | 4.63e-01 | 93.0% | 58.4% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.68 | 54.0 | 5.41e-01 | 95.3% | 100.0% |
| 2bi7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 56.0 | 3.58e-01 | 93.0% | 19.4% |
| 1jeiA00 | 1.10.720.40 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.67 | 42.0 | 3.99e-01 | 95.3% | 50.9% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 53.0 | 4.66e-01 | 100.0% | 59.5% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.65 | 57.0 | 3.47e-01 | 100.0% | 29.9% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.62 | 47.0 | 3.62e-01 | 86.0% | 33.9% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 47.0 | 4.05e-01 | 93.0% | 54.4% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.58 | 45.0 | 3.86e-01 | 100.0% | 95.3% |
| 2jroA01 | 3.30.1910.10 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain | 0.57 | 50.0 | 4.40e-01 | 100.0% | 76.9% |
| 1oyiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.68e-01 | 83.7% | 59.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3523218 | 604.1.1.112 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › CCDC15_C | 0.87 | 75.0 | 5.55e-01 | 93.0% | 41.0% |
| 3745853 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.87 | 76.0 | 4.93e-01 | 100.0% | 23.2% |
| 4175971 | 604.3.1.43 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX | 0.85 | 66.0 | 5.11e-01 | 97.7% | 40.0% |
| 3176538 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.83 | 72.0 | 4.50e-01 | 100.0% | 18.3% |
| 3507551 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.80 | 70.0 | 5.42e-01 | 100.0% | 46.3% |
| 3703494 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 69.0 | 5.13e-01 | 100.0% | 39.1% |
| 5009506 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 69.0 | 5.20e-01 | 100.0% | 41.0% |
| 4265467 | 2486.1.1.6 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ACCA | 0.79 | 71.0 | 4.15e-01 | 100.0% | 13.0% |
| 4838801 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.78 | 67.0 | 5.90e-01 | 100.0% | 66.2% |
| 3237324 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.78 | 66.0 | 6.02e-01 | 100.0% | 71.7% |
| 4951588 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.77 | 63.0 | 4.57e-01 | 100.0% | 32.3% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.76 | 57.0 | 5.11e-01 | 90.7% | 58.3% |
| 1487328 | 3928.1.1.1 ↗ | alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA › CrgA | 0.76 | 65.0 | 6.28e-01 | 100.0% | 86.0% |
| 4793214 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.76 | 66.0 | 4.99e-01 | 100.0% | 69.2% |
| 3554931 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 66.0 | 6.18e-01 | 100.0% | 92.6% |
| 4973141 | 192.17.1.19 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › GrpE | 0.74 | 60.0 | 5.69e-01 | 100.0% | 76.4% |
| 3878682 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.74 | 63.0 | 4.07e-01 | 100.0% | 21.0% |
| 3544073 | 207.1.1.63 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6,LRR_8 | 0.74 | 63.0 | 3.59e-01 | 100.0% | 9.1% |
| 3989824 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.73 | 63.0 | 6.01e-01 | 100.0% | 86.0% |
| 3234298 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 64.0 | 5.93e-01 | 100.0% | 85.5% |
| 4053061 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.73 | 64.0 | 6.18e-01 | 100.0% | 91.8% |
| 1106555 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.73 | 60.0 | 5.16e-01 | 100.0% | 59.1% |
| 3754265 | 603.1.1.187 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DNA_repr_REX1B | 0.72 | 55.0 | 4.49e-01 | 100.0% | 43.3% |
| 3213470 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 59.0 | 4.65e-01 | 100.0% | 43.0% |
| 3506243 | 3602.1.1.3 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Enkurin | 0.70 | 60.0 | 5.11e-01 | 100.0% | 57.3% |
| 3692167 | 109.4.1.1435 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, VPS15-like_hel | 0.69 | 53.0 | 2.91e-01 | 93.0% | 5.5% |
| 3214887 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 52.0 | 5.07e-01 | 100.0% | 80.0% |
| 3272165 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.66 | 57.0 | 4.28e-01 | 100.0% | 40.9% |
| 5002882 | 4207.1.1.133 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › BREX_BrxC_4th | 0.63 | 51.0 | 3.86e-01 | 100.0% | 44.0% |