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MW578836.1__QSM01129.1__SEA_NANOSMITE_84__00084

Bact-Vir

MW578836.1__QSM01129.1__SEA_NANOSMITE_84__00084

Identity

Accession:
MW578836 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Reyvirus› Mycobacterium_phage_Nanosmite

TaxID: 2813164

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-45
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.85 49.0 2.91e-01 95.6% 9.5%
3zbqA00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.72 49.0 2.96e-01 71.1% 10.2%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.69 45.0 4.02e-01 82.2% 47.6%
5xzwA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 50.0 3.44e-01 84.4% 35.9%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 52.0 3.70e-01 95.6% 45.9%
1qr0A02 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 48.0 3.71e-01 88.9% 69.9%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.59 43.0 3.89e-01 84.4% 59.6%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.57 40.0 2.81e-01 80.0% 47.1%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.56 46.0 2.73e-01 95.6% 12.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 46.0 3.03e-01 100.0% 82.0%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.52 46.0 3.17e-01 100.0% 45.9%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.63e-01 93.3% 67.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924973 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.84 45.0 2.51e-01 88.9% 4.7%
4532008 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 62.0 3.46e-01 80.0% 8.9%
3716727 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.81 45.0 2.57e-01 84.4% 6.3%
3687315 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 56.0 3.52e-01 80.0% 17.8%
4026067 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.74 64.0 3.67e-01 100.0% 26.4%
3742405 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.74 37.0 2.80e-01 84.4% 24.2%
3923603 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.70 52.0 3.11e-01 80.0% 52.5%
4930399 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 44.0 2.98e-01 73.3% 20.0%
5035122 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.62 53.0 3.56e-01 93.3% 39.4%
1382449 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 47.0 3.16e-01 82.2% 34.2%
3211040 910.1.1.1 ↗ few secondary structure elements › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › Cysteine-rich DNA binding domain, (DM domain) › DM 0.61 43.0 3.80e-01 80.0% 87.8%
3967247 304.48.1.14 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.60 48.0 3.25e-01 91.1% 28.3%
3517280 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.57 50.0 2.96e-01 100.0% 35.9%
4045124 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.56 52.0 3.09e-01 100.0% 16.5%
4018556 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.52 46.0 3.17e-01 100.0% 42.5%
3718521 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.51 42.0 3.03e-01 91.1% 72.6%
4001918 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 36.0 3.29e-01 77.8% 83.1%
3685043 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 44.0 2.88e-01 95.6% 42.6%