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MW582532.1__QSL67860.1__X__00078

Bact-Vir

MW582532.1__QSL67860.1__X__00078

Identity

Accession:
MW582532 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nocardia_phage_P3.1

TaxID: 2815755

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-124
PDB
Domain cluster: rep: IMGVR_UViG_3300032127_000424-3300032127-Ga0315305_10098472__D246-400
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14464.12 best Prok-JAB 59.2 4.90e-16 90.0% 91.2%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.88 81.0 7.57e-01 96.7% 96.5%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.85 81.0 7.47e-01 100.0% 89.0%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.82 78.0 7.19e-01 100.0% 95.9%
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.81 76.0 6.72e-01 100.0% 85.5%
1oi0A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.81 65.0 6.88e-01 100.0% 92.6%
4f7oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.78 73.0 5.71e-01 100.0% 63.4%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.76 71.0 6.47e-01 99.2% 87.6%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 57.0 5.50e-01 93.3% 91.9%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 56.0 5.35e-01 93.3% 90.8%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 55.0 5.23e-01 94.2% 88.0%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 54.0 4.89e-01 100.0% 90.2%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 46.0 4.74e-01 84.2% 93.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 30.0 3.36e-01 78.3% 61.5%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.57 44.0 4.17e-01 83.3% 98.6%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.50e-01 76.7% 66.3%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 39.0 3.95e-01 77.5% 81.7%
1jdpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 46.0 4.05e-01 96.7% 93.9%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.22e-01 75.8% 90.5%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.18e-01 75.0% 49.2%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 41.0 4.13e-01 92.5% 89.8%
2xfaA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 38.0 3.59e-01 97.5% 66.4%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 41.0 3.94e-01 87.5% 76.5%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 33.0 3.62e-01 82.5% 81.6%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988784 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.91 88.0 8.32e-01 100.0% 93.5%
5038834 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.90 86.0 8.13e-01 100.0% 90.6%
3956284 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.90 86.0 7.96e-01 100.0% 88.3%
4551778 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.89 84.0 8.37e-01 100.0% 95.9%
4998323 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.89 85.0 7.91e-01 100.0% 91.0%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.88 84.0 8.20e-01 100.0% 96.2%
4153379 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.88 85.0 7.97e-01 100.0% 87.1%
3970256 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.88 84.0 7.64e-01 100.0% 92.7%
4994059 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.87 83.0 7.90e-01 99.2% 95.6%
4946921 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.86 81.0 7.03e-01 100.0% 82.9%
3378032 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.85 80.0 6.69e-01 100.0% 89.2%
136190 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.85 81.0 7.64e-01 100.0% 94.2%
3943542 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.85 75.0 7.45e-01 92.5% 96.0%
4978781 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.84 78.0 7.03e-01 100.0% 95.0%
3590544 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.83 78.0 7.19e-01 99.2% 94.6%
5049152 109.4.1.3609 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › JAB 0.83 78.0 5.16e-01 100.0% 35.8%
5041620 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.83 78.0 6.20e-01 100.0% 69.3%
3713859 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.83 78.0 6.06e-01 100.0% 73.6%
5075019 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.83 77.0 6.29e-01 100.0% 84.8%
4646372 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.83 77.0 6.15e-01 100.0% 67.6%
4116968 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.82 77.0 7.06e-01 100.0% 100.0%
3797466 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.82 77.0 6.36e-01 100.0% 87.0%
3996565 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.82 77.0 5.86e-01 100.0% 66.7%
4997258 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.82 76.0 6.94e-01 100.0% 94.8%
3466416 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.81 76.0 6.16e-01 100.0% 85.2%
4981873 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.81 75.0 6.20e-01 100.0% 77.1%
5068304 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.80 75.0 6.93e-01 100.0% 90.7%
5076226 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.80 76.0 7.07e-01 100.0% 93.8%
5010420 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.80 67.0 7.04e-01 86.7% 97.2%
5041727 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.79 74.0 6.63e-01 99.2% 94.4%
3934645 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.79 74.0 6.21e-01 100.0% 86.3%
3799804 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.78 72.0 6.01e-01 100.0% 72.9%
3246591 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.77 72.0 6.09e-01 100.0% 75.3%
3663319 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.77 71.0 5.99e-01 100.0% 88.2%
4952815 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.77 71.0 6.80e-01 100.0% 86.7%
3993633 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.77 71.0 5.75e-01 100.0% 69.4%
4966390 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 69.0 6.81e-01 100.0% 91.2%
4970360 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 69.0 6.74e-01 100.0% 88.5%
5038145 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 68.0 6.80e-01 100.0% 91.9%
5029699 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.75 68.0 6.74e-01 99.2% 92.7%
4994734 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.74 67.0 6.71e-01 99.2% 95.0%
5075095 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.69 64.0 6.25e-01 100.0% 90.7%
4012760 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 58.0 5.29e-01 93.3% 79.9%
5057963 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.67 58.0 5.49e-01 94.2% 94.5%
332272 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.64 55.0 5.23e-01 94.2% 88.0%
3017662 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.64 54.0 5.25e-01 93.3% 91.2%
3807414 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.60 46.0 4.43e-01 84.2% 83.2%
4096833 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.59 46.0 4.75e-01 83.3% 93.0%
4142960 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.59 46.0 4.74e-01 84.2% 92.2%
3344184 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.59 35.0 3.28e-01 78.3% 46.9%
11435 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.59 46.0 4.40e-01 84.2% 74.3%
4372406 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.58 45.0 4.63e-01 83.3% 93.0%
4666731 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.58 33.0 4.28e-01 100.0% 98.6%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 26.0 3.74e-01 71.7% 100.0%
3926153 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 47.0 4.10e-01 95.8% 81.1%
5012791 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 48.0 4.46e-01 100.0% 89.3%
3200256 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 45.0 4.21e-01 100.0% 74.0%
3212416 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 29.0 3.30e-01 81.7% 73.3%