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MW582634.1__QRV71376.1__clg_20__00020
Bact-VirMW582634.1__QRV71376.1__clg_20__00020
Identity
- Accession:
- MW582634 ↗
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-56
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.74 | 58.0 | 5.66e-01 | 100.0% | 80.8% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 48.0 | 4.03e-01 | 79.5% | 78.5% |
| 6mrc100 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.59 | 47.0 | 3.83e-01 | 97.7% | 63.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 42.0 | 3.04e-01 | 86.4% | 52.4% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.58 | 44.0 | 3.47e-01 | 100.0% | 49.2% |
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.57 | 42.0 | 3.33e-01 | 93.2% | 82.6% |
| 1o75A02 | 2.30.30.470 | Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B | 0.56 | 41.0 | 3.27e-01 | 86.4% | 85.7% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 38.0 | 3.61e-01 | 84.1% | 56.1% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.22e-01 | 100.0% | 46.7% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 38.0 | 2.28e-01 | 100.0% | 8.6% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.53 | 40.0 | 2.72e-01 | 81.8% | 54.8% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.53 | 36.0 | 3.13e-01 | 70.5% | 98.7% |
| 2jneA00 | 2.10.290.10 | Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like | 0.53 | 34.0 | 3.05e-01 | 88.6% | 38.0% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.53 | 40.0 | 2.79e-01 | 90.9% | 88.1% |
| 1a2fA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.53 | 39.0 | 3.00e-01 | 88.6% | 69.4% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.52 | 34.0 | 2.39e-01 | 100.0% | 17.2% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 40.0 | 2.81e-01 | 84.1% | 62.5% |
| 2ja2A02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.51 | 38.0 | 2.94e-01 | 88.6% | 69.2% |
| 1flcA01 | 2.20.70.20 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.50 | 37.0 | 3.93e-01 | 90.9% | 100.0% |
| 4griA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.50 | 37.0 | 2.84e-01 | 86.4% | 69.1% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.50 | 40.0 | 2.44e-01 | 93.2% | 30.0% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.50 | 38.0 | 2.55e-01 | 97.7% | 51.0% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.50 | 38.0 | 2.89e-01 | 81.8% | 82.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934815 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.73 | 59.0 | 5.89e-01 | 97.7% | 93.3% |
| 4991580 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.73 | 58.0 | 5.73e-01 | 97.7% | 94.0% |
| 4943413 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.73 | 56.0 | 5.65e-01 | 97.7% | 88.9% |
| 4928098 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.70 | 56.0 | 5.57e-01 | 97.7% | 91.1% |
| 4961266 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.70 | 53.0 | 5.35e-01 | 95.5% | 88.9% |
| 5077378 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.70 | 55.0 | 5.57e-01 | 97.7% | 93.3% |
| 4940521 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.69 | 56.0 | 5.49e-01 | 100.0% | 88.0% |
| 5038450 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.66 | 44.0 | 2.74e-01 | 100.0% | 11.5% |
| 4339016 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.66 | 54.0 | 4.25e-01 | 100.0% | 42.9% |
| 4640974 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 52.0 | 3.93e-01 | 95.5% | 47.5% |
| 5013988 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 50.0 | 3.84e-01 | 100.0% | 42.3% |
| 3713587 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 50.0 | 4.07e-01 | 97.7% | 86.0% |
| 3385723 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.63 | 51.0 | 4.17e-01 | 100.0% | 49.5% |
| 3715045 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 38.0 | 3.32e-01 | 97.7% | 37.1% |
| 4001347 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.61 | 45.0 | 3.53e-01 | 93.2% | 33.9% |
| 5022991 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 38.0 | 3.03e-01 | 95.5% | 26.7% |
| 3828823 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.59 | 46.0 | 2.87e-01 | 88.6% | 23.0% |
| 5014142 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 46.0 | 2.80e-01 | 100.0% | 13.0% |
| 3478869 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 39.0 | 2.50e-01 | 70.5% | 28.2% |
| 3236041 | 4.1.1.342 ↗ | beta barrels › SH3 › SH3 › SH3 › TRA-1_regulated | 0.59 | 46.0 | 3.56e-01 | 100.0% | 64.0% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.58 | 46.0 | 3.49e-01 | 97.7% | 58.4% |
| 3702718 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.57 | 42.0 | 2.71e-01 | 79.5% | 56.9% |
| 4569699 | 2002.1.1.61 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MS_TIM-barrel,MS_N,MSG_insertion,MS_C | 0.57 | 42.0 | 2.32e-01 | 79.5% | 47.6% |
| 5053161 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 42.0 | 3.01e-01 | 86.4% | 75.3% |
| 3594033 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 42.0 | 2.70e-01 | 84.1% | 96.4% |
| 4677491 | 5.1.4.87 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD | 0.56 | 43.0 | 2.55e-01 | 90.9% | 14.7% |
| 5076015 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 36.0 | 2.47e-01 | 70.5% | 24.1% |
| 3175923 | 236.1.2.1 ↗ | beta barrels › GroES-like › GroES-related › GroES › Cpn10 | 0.55 | 41.0 | 3.48e-01 | 97.7% | 64.0% |
| 5029394 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 46.0 | 3.01e-01 | 97.7% | 48.4% |
| 3456292 | 2.1.1.134 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE | 0.54 | 39.0 | 2.97e-01 | 90.9% | 82.8% |
| 3935753 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 36.0 | 2.40e-01 | 70.5% | 30.5% |
| 3936762 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 37.0 | 2.39e-01 | 70.5% | 27.9% |
| 5059846 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 41.0 | 2.94e-01 | 88.6% | 75.2% |
| 3585959 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 37.0 | 2.35e-01 | 75.0% | 62.9% |
| 4942056 | 11.4.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) | 0.52 | 38.0 | 2.83e-01 | 86.4% | 53.6% |
| 3416001 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.52 | 32.0 | 3.36e-01 | 93.2% | 62.5% |
| 3247176 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 40.0 | 2.72e-01 | 86.4% | 25.0% |
| 2407461 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.51 | 37.0 | 2.81e-01 | 93.2% | 28.2% |
| 3479782 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 36.0 | 2.59e-01 | 86.4% | 79.5% |
| 4992572 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.51 | 37.0 | 2.82e-01 | 93.2% | 27.9% |
| 3276759 | 3529.1.1.6 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 | 0.50 | 34.0 | 3.10e-01 | 72.7% | 88.6% |