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MW582634.1__QRV71424.1__clg_68__00068
Bact-VirMW582634.1__QRV71424.1__clg_68__00068
Identity
- Accession:
- MW582634 ↗
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-69
Domain cluster:
rep: NC_074638__YP_010772018.1__QIT35-gp28__00028__D11-63
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 67.0 | 5.72e-01 | 100.0% | 61.3% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.65 | 60.0 | 4.70e-01 | 100.0% | 52.8% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.62 | 55.0 | 5.13e-01 | 100.0% | 87.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.88 | 67.0 | 6.86e-01 | 100.0% | 83.1% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.75 | 59.0 | 6.16e-01 | 100.0% | 94.5% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 64.0 | 6.33e-01 | 100.0% | 89.2% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 65.0 | 6.07e-01 | 100.0% | 92.0% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.67 | 60.0 | 5.91e-01 | 100.0% | 96.9% |
| 3948608 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.66 | 59.0 | 5.82e-01 | 96.7% | 93.8% |
| 364260 | 70.4.1.3 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 | 0.65 | 60.0 | 4.32e-01 | 100.0% | 64.4% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.63 | 57.0 | 5.49e-01 | 100.0% | 94.2% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.63 | 56.0 | 5.30e-01 | 100.0% | 93.2% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 56.0 | 5.28e-01 | 100.0% | 90.4% |
| 3398750 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 55.0 | 5.07e-01 | 100.0% | 91.3% |
| 4219259 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.59 | 42.0 | 4.42e-01 | 100.0% | 83.6% |
D2
high
residues 73-127
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.82 | 74.0 | 6.15e-01 | 100.0% | 96.8% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.81 | 72.0 | 5.98e-01 | 100.0% | 92.6% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.74 | 66.0 | 5.07e-01 | 100.0% | 99.2% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.69 | 54.0 | 4.86e-01 | 96.4% | 62.7% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 52.0 | 4.77e-01 | 100.0% | 62.2% |
| 1mbmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 46.0 | 4.28e-01 | 90.9% | 58.3% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 53.0 | 4.31e-01 | 100.0% | 51.4% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.61 | 50.0 | 3.05e-01 | 94.5% | 14.8% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.61 | 50.0 | 3.09e-01 | 96.4% | 15.1% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 48.0 | 4.20e-01 | 94.5% | 57.6% |
| 2wzpR01 | 2.30.300.20 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 | 0.60 | 49.0 | 3.38e-01 | 90.9% | 31.1% |
| 1f60A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 50.0 | 4.08e-01 | 96.4% | 66.7% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 42.0 | 4.12e-01 | 96.4% | 70.5% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 49.0 | 3.73e-01 | 100.0% | 49.7% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.58 | 43.0 | 4.16e-01 | 92.7% | 71.0% |
| 3va7A07 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 45.0 | 4.13e-01 | 89.1% | 93.4% |
| 1ng2A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 41.0 | 4.42e-01 | 76.4% | 100.0% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 48.0 | 3.89e-01 | 100.0% | 53.0% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 42.0 | 3.76e-01 | 81.8% | 63.7% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.56 | 44.0 | 4.20e-01 | 100.0% | 75.8% |
| 1ynjD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 46.0 | 4.71e-01 | 92.7% | 100.0% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 37.0 | 3.57e-01 | 72.7% | 74.2% |
| 1ygaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 42.0 | 2.68e-01 | 96.4% | 49.1% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.49e-01 | 89.1% | 67.0% |
| 1jovA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 2.85e-01 | 96.4% | 42.8% |
| 2ijzA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.51 | 40.0 | 3.40e-01 | 94.5% | 63.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.88 | 74.0 | 7.47e-01 | 90.9% | 100.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.87 | 75.0 | 7.33e-01 | 92.7% | 100.0% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.77 | 69.0 | 6.80e-01 | 100.0% | 93.2% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.77 | 63.0 | 6.15e-01 | 89.1% | 96.7% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.77 | 65.0 | 6.32e-01 | 92.7% | 98.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 67.0 | 6.19e-01 | 100.0% | 97.1% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.71 | 63.0 | 5.68e-01 | 100.0% | 98.7% |
| 3820836 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.64 | 56.0 | 4.85e-01 | 100.0% | 63.5% |
| 4219259 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.64 | 52.0 | 5.24e-01 | 90.9% | 89.1% |
| 4583854 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 51.0 | 5.30e-01 | 89.1% | 96.0% |
| 3250056 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 54.0 | 4.15e-01 | 96.4% | 50.4% |
| 3480213 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.62 | 44.0 | 4.47e-01 | 76.4% | 89.1% |
| 3945030 | 325.1.7.21 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_RND | 0.61 | 50.0 | 4.73e-01 | 89.1% | 98.5% |
| 1823202 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.61 | 50.0 | 4.14e-01 | 94.5% | 54.7% |
| 3966724 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 51.0 | 4.32e-01 | 98.2% | 68.4% |
| 3435006 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.57 | 43.0 | 4.07e-01 | 80.0% | 73.8% |
| 3963475 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 43.0 | 3.74e-01 | 96.4% | 64.2% |
| 4122447 | 12.1.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Malt_amylase_C | 0.53 | 38.0 | 3.22e-01 | 100.0% | 44.2% |
| 4386251 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 37.0 | 3.15e-01 | 100.0% | 44.2% |
| 3385895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 42.0 | 3.81e-01 | 94.5% | 76.2% |
| 3830988 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.51 | 35.0 | 3.01e-01 | 94.5% | 41.1% |
| 4936167 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.51 | 39.0 | 3.19e-01 | 94.5% | 91.5% |