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MW584152.1__QSM01711.1__PROPHIGD11-1_41__00041

Bact-Vir

MW584152.1__QSM01711.1__PROPHIGD11-1_41__00041

Identity

Accession:
MW584152 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-55
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.76 54.0 5.44e-01 77.8% 91.3%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 56.0 4.28e-01 100.0% 44.3%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.66 47.0 3.22e-01 77.8% 22.1%
1y1uA02 2.60.40.630 Mainly Beta › Sandwich › Immunoglobulin-like › STAT transcription factor, DNA-binding domain 0.65 46.0 3.37e-01 77.8% 68.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 43.0 2.93e-01 75.6% 19.0%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 48.0 3.74e-01 82.2% 62.0%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 44.0 4.08e-01 77.8% 57.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.62 44.0 4.16e-01 77.8% 64.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 51.0 3.71e-01 100.0% 56.2%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.62 43.0 3.25e-01 75.6% 33.6%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.61 49.0 4.29e-01 100.0% 74.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.37e-01 77.8% 35.0%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.60 43.0 3.15e-01 77.8% 26.1%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 43.0 3.09e-01 77.8% 24.8%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 42.0 2.43e-01 75.6% 14.7%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.60 47.0 4.07e-01 100.0% 65.1%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.59 47.0 3.43e-01 100.0% 93.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.96e-01 100.0% 51.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 45.0 3.71e-01 100.0% 73.5%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.06e-01 86.7% 23.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 37.0 3.47e-01 80.0% 49.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.68e-01 82.2% 59.4%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 49.0 3.14e-01 100.0% 31.2%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 42.0 3.16e-01 91.1% 30.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 47.0 3.96e-01 97.8% 63.7%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 44.0 3.46e-01 100.0% 65.8%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.55 38.0 3.22e-01 80.0% 41.6%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 47.0 3.52e-01 100.0% 46.3%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 2.94e-01 77.8% 28.9%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 37.0 2.35e-01 77.8% 11.5%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 38.0 2.36e-01 86.7% 11.1%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 44.0 3.37e-01 100.0% 65.3%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.33e-01 100.0% 41.5%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.61e-01 100.0% 58.2%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.53e-01 97.8% 87.4%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 43.0 3.35e-01 100.0% 47.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 45.0 3.83e-01 100.0% 63.5%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.51 43.0 2.96e-01 100.0% 53.8%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.77e-01 80.0% 87.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 42.0 3.39e-01 100.0% 45.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 39.0 3.02e-01 100.0% 54.8%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.46e-01 100.0% 36.5%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 39.0 3.26e-01 100.0% 55.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965857 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 65.0 5.69e-01 100.0% 95.7%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.73 61.0 5.30e-01 100.0% 60.0%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 57.0 4.16e-01 100.0% 32.8%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 60.0 5.70e-01 100.0% 89.1%
3588192 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.71 59.0 5.80e-01 97.8% 90.0%
4024560 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.70 56.0 3.85e-01 100.0% 24.9%
3587376 386.1.1.344 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 0.69 58.0 5.51e-01 100.0% 87.3%
5080802 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.69 58.0 5.36e-01 100.0% 80.0%
3588108 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.67 59.0 5.71e-01 97.8% 90.0%
3174293 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.66 37.0 2.47e-01 80.0% 13.0%
3201410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 3.90e-01 100.0% 31.0%
5043209 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 54.0 3.86e-01 100.0% 30.7%
3511457 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 53.0 3.95e-01 100.0% 34.8%
4029815 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 3.88e-01 100.0% 33.8%
4025162 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 46.0 3.77e-01 82.2% 73.7%
4946320 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 55.0 3.97e-01 100.0% 37.0%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.64 53.0 4.43e-01 100.0% 56.5%
3476535 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 50.0 3.70e-01 100.0% 32.6%
5009939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 3.82e-01 100.0% 39.0%
3840029 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.62 43.0 3.34e-01 77.8% 42.6%
4990492 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 42.0 4.13e-01 73.3% 66.0%
3998368 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 50.0 3.55e-01 100.0% 78.6%
3487326 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.60 48.0 4.39e-01 100.0% 66.2%
3838020 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.60 50.0 3.89e-01 100.0% 46.4%
3966283 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 45.0 3.25e-01 84.4% 27.1%
5051838 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.60 49.0 3.62e-01 97.8% 32.6%
3705431 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 49.0 3.81e-01 100.0% 80.0%
3608636 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 2.75e-01 100.0% 11.3%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.59 42.0 3.41e-01 77.8% 37.6%
4194238 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.59 34.0 2.83e-01 100.0% 32.5%
3716046 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 48.0 2.76e-01 95.6% 61.9%
4560015 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 43.0 3.66e-01 80.0% 50.7%
3977489 377.1.1.117 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 0.58 43.0 4.21e-01 84.4% 72.0%
4995812 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.58 42.0 3.30e-01 77.8% 35.0%
3999570 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.58 46.0 3.67e-01 100.0% 41.0%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.12e-01 77.8% 87.5%
3925345 221.4.1.18 a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N 0.57 40.0 2.54e-01 80.0% 18.3%
3949139 205.1.1.17 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.57 40.0 2.84e-01 77.8% 68.1%
4927548 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 41.0 3.12e-01 77.8% 30.0%
3997815 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.64e-01 100.0% 33.0%
3618372 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.56 46.0 3.56e-01 100.0% 52.5%
3704604 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.56 37.0 3.02e-01 75.6% 31.0%
4009252 3371.1.1.2 few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 0.56 38.0 3.76e-01 77.8% 66.0%
3781450 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.56 43.0 3.24e-01 100.0% 32.3%
3782947 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 45.0 3.46e-01 97.8% 46.7%
4990980 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 43.0 3.54e-01 93.3% 44.2%
3495550 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 44.0 3.57e-01 100.0% 44.8%
3400623 284.1.3.13 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › PF30019 0.55 42.0 3.76e-01 100.0% 57.3%
3616263 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 46.0 3.67e-01 100.0% 54.0%
3589192 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.54 33.0 2.72e-01 100.0% 33.8%
3938060 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 38.0 2.70e-01 77.8% 20.0%
4120507 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.54 40.0 3.42e-01 100.0% 44.2%
3194179 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.54 42.0 2.57e-01 91.1% 14.6%
3586391 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 39.0 2.46e-01 84.4% 61.9%
5035198 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 40.0 2.71e-01 84.4% 20.0%
3229184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.40e-01 97.8% 47.1%
3404964 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 42.0 3.34e-01 100.0% 39.1%
3934023 3343.1.1.1 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal 0.53 44.0 2.51e-01 100.0% 14.9%
3482073 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 38.0 3.66e-01 100.0% 66.7%
3439728 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 43.0 3.05e-01 95.6% 45.6%
3591346 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 42.0 2.51e-01 100.0% 17.4%
3519117 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 2.92e-01 100.0% 42.1%
3297925 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 3.89e-01 97.8% 78.3%
3576152 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 41.0 2.57e-01 93.3% 13.9%
5053573 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 38.0 2.27e-01 75.6% 9.8%
3600626 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.45e-01 100.0% 88.0%
3178258 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 40.0 2.87e-01 100.0% 49.4%
3713148 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 2.85e-01 71.1% 35.8%
3597696 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.51 39.0 3.80e-01 100.0% 85.5%
4847376 6.1.1.30 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CFAP161 0.51 39.0 2.60e-01 93.3% 29.2%
4981911 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 37.0 2.51e-01 93.3% 29.2%
4020042 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.50 37.0 2.38e-01 84.4% 46.8%
3170024 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.50 41.0 2.77e-01 93.3% 23.2%