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MW584157.1__QSM02018.1__PROPHIGD68-1_42__00040

Bact-Vir

MW584157.1__QSM02018.1__PROPHIGD68-1_42__00040

Identity

Accession:
MW584157 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-177
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04607.24 best RelA_SpoT 74.9 8.90e-21 71.9% 98.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vj7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.82 56.0 6.68e-01 86.5% 100.0%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.82 68.0 7.23e-01 85.4% 100.0%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.82 63.0 7.03e-01 89.5% 100.0%
7ztbB01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.81 70.0 7.20e-01 91.2% 93.9%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.80 61.0 6.89e-01 83.0% 100.0%
4wcwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.77 47.0 5.81e-01 84.8% 94.6%
2id1A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.77 46.0 5.85e-01 81.9% 98.1%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.74 32.0 4.64e-01 76.0% 87.5%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.73 38.0 4.54e-01 81.9% 73.9%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.70 42.0 5.19e-01 82.5% 94.4%
4alzA01 3.30.1340.30 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 0.70 28.0 4.39e-01 73.7% 98.4%
1ml8A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.69 40.0 5.15e-01 80.7% 100.0%
6s2vC02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.69 56.0 6.04e-01 86.0% 100.0%
2pbeA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 39.0 4.40e-01 77.8% 75.0%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.65 40.0 5.01e-01 80.7% 100.0%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.65 40.0 4.46e-01 82.5% 78.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 31.0 4.22e-01 82.5% 90.5%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.63 41.0 4.56e-01 84.8% 82.1%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 19.0 2.91e-01 72.5% 62.5%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 30.0 4.00e-01 80.1% 89.3%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 37.0 4.06e-01 83.0% 73.7%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.56 42.0 4.32e-01 87.7% 79.9%
1r62A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 32.0 3.52e-01 84.2% 67.6%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.53 23.0 2.77e-01 84.8% 57.4%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 30.0 3.52e-01 78.4% 80.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.56e-01 83.0% 89.3%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 30.0 3.50e-01 78.4% 82.1%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 32.0 3.78e-01 88.9% 90.6%
1a6jB00 3.40.930.10 Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A 0.51 30.0 3.14e-01 80.7% 61.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968492 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.91 86.0 6.05e-01 100.0% 36.9%
4928888 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.84 74.0 7.09e-01 95.3% 81.6%
4169713 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.83 77.0 7.16e-01 95.9% 83.4%
6825 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.83 76.0 7.13e-01 95.9% 81.3%
6824 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.82 67.0 7.25e-01 95.3% 100.0%
4832530 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.79 64.0 6.94e-01 82.5% 100.0%
3670948 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.79 71.0 6.76e-01 93.6% 85.1%
4821392 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.79 55.0 6.49e-01 82.5% 100.0%
3832774 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.78 67.0 6.96e-01 90.6% 100.0%
3276089 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.75 64.0 6.52e-01 93.0% 90.9%
3668029 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.74 69.0 6.42e-01 98.2% 100.0%
3367594 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.74 69.0 6.82e-01 98.2% 96.7%
3589006 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.73 69.0 6.58e-01 98.8% 100.0%
4043620 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.73 69.0 6.78e-01 98.2% 100.0%
3838458 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.73 69.0 6.78e-01 99.4% 96.1%
4196711 316.1.1.13 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.72 67.0 6.63e-01 98.8% 96.1%
2576225 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.72 67.0 6.37e-01 98.2% 92.8%
5077937 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.71 41.0 4.75e-01 77.2% 76.2%
4971602 316.1.1.45 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.71 50.0 5.33e-01 94.2% 83.1%
3646737 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 57.0 5.89e-01 97.1% 100.0%
3297783 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.61 46.0 3.56e-01 77.8% 94.9%
3962036 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.60 36.0 4.19e-01 78.4% 84.2%
4021163 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.59 54.0 4.70e-01 97.1% 97.2%
3278906 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 35.0 3.70e-01 77.8% 63.1%
4436276 316.1.1.12 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Adenyl_transf 0.58 45.0 4.98e-01 88.3% 100.0%
5025721 331.5.1.1 a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 0.58 32.0 3.71e-01 78.4% 72.8%
3731304 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 39.0 4.04e-01 83.6% 74.8%
3223286 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.53 36.0 3.98e-01 81.9% 87.4%
3613623 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.52 40.0 4.25e-01 87.1% 93.3%
3946561 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.51 30.0 3.17e-01 79.5% 63.2%
4009891 311.1.1.1 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 0.51 30.0 3.27e-01 81.9% 67.6%
4025227 304.34.1.1 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK 0.51 37.0 3.99e-01 83.0% 91.4%
D2 high residues 227-330
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wd3A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 51.0 5.56e-01 87.5% 97.6%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 46.0 5.24e-01 86.5% 100.0%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.65 33.0 3.32e-01 80.8% 46.2%
4d81A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 43.0 4.51e-01 88.5% 85.1%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 39.0 4.52e-01 90.4% 100.0%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 51.0 4.54e-01 97.1% 98.7%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.58 35.0 3.90e-01 81.7% 77.5%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.58 35.0 3.79e-01 81.7% 71.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.56 41.0 3.88e-01 76.0% 70.2%
3sibA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 48.0 3.97e-01 100.0% 70.0%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 48.0 4.25e-01 100.0% 98.8%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 43.0 3.19e-01 86.5% 92.0%
6b5cA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 41.0 4.45e-01 84.6% 100.0%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 43.0 3.23e-01 92.3% 91.7%
1omvA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 34.0 3.69e-01 93.3% 79.1%
5jzeA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 43.0 3.70e-01 91.3% 68.6%
3p3lA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 37.0 2.55e-01 77.9% 72.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.65 33.0 3.34e-01 80.8% 46.7%
3823928 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.64 47.0 4.97e-01 91.3% 90.0%
3218728 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 48.0 5.18e-01 86.5% 100.0%
3265566 148.1.3.15 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 0.63 49.0 5.23e-01 92.3% 98.9%
3709213 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 51.0 5.20e-01 92.3% 95.0%
3929822 148.1.3.6 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.62 48.0 4.89e-01 87.5% 86.0%
3266036 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 49.0 5.09e-01 89.4% 96.8%
3443470 148.1.3.27 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 0.61 47.0 4.98e-01 90.4% 98.9%
3414086 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 47.0 4.93e-01 87.5% 95.6%
3699721 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.60 49.0 5.00e-01 88.5% 96.0%
3620740 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 46.0 4.76e-01 90.4% 89.5%
3596668 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 51.0 4.57e-01 95.2% 78.0%
3991092 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 49.0 4.89e-01 90.4% 95.2%
None 0.59 50.0 4.72e-01 95.2% 90.0%
3261837 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.59 49.0 4.69e-01 92.3% 96.0%
3641662 2004.1.1.530 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_lid_3 0.59 51.0 3.56e-01 97.1% 60.8%
3609318 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.59 48.0 4.83e-01 89.4% 89.5%
3401113 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.58 45.0 4.62e-01 84.6% 100.0%
None 0.58 46.0 3.49e-01 89.4% 34.3%
3479164 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 4.55e-01 91.3% 93.0%
4013393 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 44.0 4.65e-01 89.4% 98.9%
3898186 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 50.0 4.25e-01 100.0% 79.4%
3532518 148.1.3.206 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 0.56 41.0 4.38e-01 89.4% 92.0%
3490234 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.55 40.0 3.91e-01 76.9% 88.3%
5036201 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.55 37.0 2.98e-01 70.2% 90.5%
4089545 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.55 39.0 2.97e-01 74.0% 45.0%
4946621 171.1.1.16 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › dsrm 0.54 38.0 3.44e-01 75.0% 67.7%
3732156 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.51 43.0 3.41e-01 92.3% 96.3%
3484030 3542.1.1.0 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases 0.50 36.0 2.67e-01 76.9% 70.6%
3343983 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.50 41.0 2.77e-01 90.4% 46.4%