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MW584166.1__QSM02826.1__PROPHIGD88-1_90__00090
Bact-VirMW584166.1__QSM02826.1__PROPHIGD88-1_90__00090
Identity
- Accession:
- MW584166 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-129
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.62 | 34.0 | 3.79e-01 | 87.2% | 67.3% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 27.0 | 3.94e-01 | 91.2% | 94.7% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 25.0 | 3.17e-01 | 74.4% | 69.7% |
| 5e3iA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 39.0 | 4.27e-01 | 92.0% | 91.9% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 29.0 | 3.57e-01 | 90.4% | 84.0% |
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 28.0 | 2.93e-01 | 73.6% | 51.3% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 37.0 | 4.16e-01 | 92.0% | 92.6% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.49e-01 | 76.0% | 67.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4117020 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 24.0 | 3.52e-01 | 76.0% | 63.3% |
| 3300008 | 4205.1.1.3 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 | 0.67 | 61.0 | 5.03e-01 | 99.2% | 88.2% |
| 3964076 | 4205.1.1.3 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 | 0.66 | 56.0 | 5.89e-01 | 91.2% | 100.0% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 43.0 | 4.75e-01 | 88.8% | 96.0% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.58 | 45.0 | 4.66e-01 | 93.6% | 85.8% |
| 3733718 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.58 | 34.0 | 3.95e-01 | 88.0% | 82.4% |
| 3537353 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.55 | 43.0 | 3.22e-01 | 84.0% | 91.8% |
| 4643994 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 38.0 | 4.24e-01 | 97.6% | 95.7% |
| 3174350 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 29.0 | 3.72e-01 | 77.6% | 100.0% |
| 3807776 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 45.0 | 3.41e-01 | 100.0% | 69.8% |
| 4953226 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 24.0 | 3.13e-01 | 80.8% | 81.5% |
D2
high
residues 132-192
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.71 | 59.0 | 5.33e-01 | 93.4% | 79.5% |
| 7cjnB01 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.63 | 44.0 | 3.64e-01 | 73.8% | 81.2% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.63 | 54.0 | 4.02e-01 | 98.4% | 53.1% |
| 2jynA01 | 1.10.3560.10 | Mainly Alpha › Orthogonal Bundle › yst0336 like fold › yst0336 like domain | 0.61 | 42.0 | 3.35e-01 | 75.4% | 91.9% |
| 6ctzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 42.0 | 3.72e-01 | 75.4% | 97.8% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 35.0 | 2.98e-01 | 73.8% | 34.9% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 37.0 | 2.96e-01 | 75.4% | 30.1% |
| 4n4nB00 | 3.90.640.100 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.57 | 31.0 | 3.27e-01 | 70.5% | 57.1% |
| 1rypD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 44.0 | 2.96e-01 | 85.2% | 23.2% |
| 4zohA05 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 38.0 | 2.91e-01 | 70.5% | 61.0% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 42.0 | 3.21e-01 | 100.0% | 33.8% |
| 1kpsC00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 40.0 | 3.02e-01 | 77.0% | 91.7% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.52 | 43.0 | 3.25e-01 | 100.0% | 69.3% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 35.0 | 3.31e-01 | 96.7% | 58.9% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 35.0 | 2.84e-01 | 72.1% | 71.4% |
| 1xr0B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.66e-01 | 90.2% | 89.0% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 34.0 | 3.57e-01 | 83.6% | 78.2% |
| 3o2uA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 36.0 | 2.73e-01 | 77.0% | 83.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2462317 | 4205.1.1.2 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C | 0.79 | 67.0 | 4.45e-01 | 91.8% | 27.1% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.77 | 60.0 | 5.66e-01 | 85.2% | 85.3% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.77 | 61.0 | 5.26e-01 | 86.9% | 82.1% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 62.0 | 5.67e-01 | 88.5% | 82.5% |
| 2323913 | 378.1.1.24 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DNase_NucA_NucB | 0.75 | 58.0 | 4.75e-01 | 100.0% | 46.8% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 60.0 | 5.88e-01 | 90.2% | 100.0% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 59.0 | 5.80e-01 | 90.2% | 100.0% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 58.0 | 4.66e-01 | 88.5% | 63.9% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.72 | 54.0 | 5.20e-01 | 82.0% | 84.3% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 58.0 | 5.21e-01 | 88.5% | 74.1% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 55.0 | 5.75e-01 | 83.6% | 100.0% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.71 | 57.0 | 5.62e-01 | 86.9% | 87.7% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.71 | 58.0 | 5.24e-01 | 90.2% | 72.9% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 57.0 | 4.90e-01 | 88.5% | 66.0% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 57.0 | 4.95e-01 | 88.5% | 61.7% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 55.0 | 4.62e-01 | 86.9% | 58.2% |
| 4030765 | 378.1.1.11 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 | 0.71 | 63.0 | 4.54e-01 | 100.0% | 39.1% |
| 4839754 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 56.0 | 4.22e-01 | 88.5% | 41.4% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 56.0 | 4.45e-01 | 88.5% | 47.2% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 53.0 | 4.77e-01 | 88.5% | 65.6% |
| 3695527 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.67 | 59.0 | 4.75e-01 | 100.0% | 66.7% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.67 | 54.0 | 3.99e-01 | 90.2% | 68.3% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.67 | 54.0 | 4.51e-01 | 93.4% | 87.0% |
| 3948700 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.66 | 53.0 | 4.27e-01 | 90.2% | 96.8% |
| 3218708 | 378.1.2.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH | 0.66 | 46.0 | 4.36e-01 | 73.8% | 90.5% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 49.0 | 3.47e-01 | 83.6% | 58.4% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 51.0 | 4.72e-01 | 98.4% | 69.4% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.62 | 54.0 | 4.98e-01 | 100.0% | 91.3% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.58 | 50.0 | 4.33e-01 | 100.0% | 83.0% |
| 4458271 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.58 | 41.0 | 2.67e-01 | 77.0% | 41.3% |
| 2721621 | 3753.1.1.1 ↗ | few secondary structure elements › hypothetical protein NE1300 › hypothetical protein NE1300 › hypothetical protein NE1300 › HAO_bd | 0.57 | 34.0 | 3.42e-01 | 72.1% | 57.8% |
| 3599620 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.57 | 43.0 | 3.50e-01 | 100.0% | 43.5% |
| 3869469 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 41.0 | 3.27e-01 | 100.0% | 36.4% |
| 3719136 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 44.0 | 2.70e-01 | 91.8% | 85.2% |
| 4042634 | 109.4.1.382 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS | 0.52 | 41.0 | 2.65e-01 | 86.9% | 51.0% |
| 3385781 | 2003.1.15.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain | 0.51 | 41.0 | 2.85e-01 | 85.2% | 72.4% |
| 4029147 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.51 | 44.0 | 3.18e-01 | 96.7% | 87.4% |
| 4498066 | 323.1.1.9 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C | 0.51 | 43.0 | 2.62e-01 | 100.0% | 71.7% |