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MW584167.1__QST89469.1__PROPHIGD43A-5_61__00059

Bact-Vir

MW584167.1__QST89469.1__PROPHIGD43A-5_61__00059

Identity

Accession:
MW584167 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-61
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.79 52.0 4.65e-01 98.4% 49.4%
1nu7D02 1.20.120.760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 0.70 52.0 4.07e-01 78.7% 68.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 3.66e-01 72.1% 82.3%
1lj8A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 56.0 3.88e-01 96.7% 49.3%
4h3tA02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.64 55.0 4.30e-01 100.0% 44.7%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 45.0 4.08e-01 96.7% 52.3%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 54.0 3.52e-01 100.0% 21.6%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.63 51.0 3.84e-01 91.8% 82.7%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 44.0 3.40e-01 91.8% 30.7%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.62 54.0 5.27e-01 98.4% 98.5%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 4.25e-01 80.3% 73.8%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 49.0 4.06e-01 86.9% 90.6%
7mdhA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.61 51.0 3.75e-01 95.1% 48.0%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.61 51.0 4.15e-01 96.7% 48.7%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.46e-01 88.5% 67.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 44.0 3.27e-01 78.7% 92.8%
2wyoC01 3.30.1490.250 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 53.0 4.44e-01 100.0% 60.6%
4gczB03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 40.0 3.01e-01 98.4% 27.3%
7jpxA02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.58 48.0 3.85e-01 91.8% 80.2%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 45.0 3.82e-01 91.8% 56.6%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 48.0 3.56e-01 96.7% 41.0%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 45.0 3.24e-01 98.4% 75.4%
7apeB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 46.0 3.41e-01 95.1% 39.2%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 3.64e-01 83.6% 69.6%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.55 46.0 4.34e-01 100.0% 81.8%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.55 45.0 4.05e-01 100.0% 63.5%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 3.60e-01 90.2% 47.1%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 39.0 3.47e-01 80.3% 56.3%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 44.0 3.37e-01 100.0% 69.7%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.75e-01 73.8% 87.3%
1o69A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 40.0 3.22e-01 85.2% 88.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.54 44.0 4.01e-01 90.2% 70.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.34e-01 86.9% 82.9%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.87e-01 80.3% 78.1%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.53 41.0 4.04e-01 100.0% 80.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 46.0 3.88e-01 100.0% 66.0%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 45.0 2.81e-01 96.7% 16.1%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 44.0 3.63e-01 96.7% 86.1%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.52 37.0 3.45e-01 78.7% 85.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 3.76e-01 96.7% 93.9%
3spdA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.51 44.0 3.12e-01 96.7% 60.0%
4qozC00 1.10.8.1120 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone RNA hairpin-binding protein RNA-binding domain 0.51 40.0 3.79e-01 85.2% 75.3%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.51 42.0 3.20e-01 91.8% 40.8%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.51 36.0 2.72e-01 100.0% 27.1%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 40.0 3.74e-01 88.5% 71.4%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 41.0 4.04e-01 90.2% 87.5%
4qp0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 42.0 2.68e-01 100.0% 43.1%
3hz6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 2.94e-01 100.0% 87.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929962 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.78 67.0 4.40e-01 95.1% 25.9%
3212403 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.74 63.0 4.14e-01 95.1% 25.5%
3174690 5001.1.1.133 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Git3, GPR_Gpa2_C 0.68 47.0 2.95e-01 73.8% 70.1%
4187835 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 49.0 4.04e-01 80.3% 86.4%
3291221 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.63 50.0 3.89e-01 88.5% 82.1%
4045052 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.62 53.0 4.40e-01 98.4% 65.2%
3497542 626.1.1.1 alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.62 47.0 2.94e-01 85.2% 16.4%
3287147 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.61 50.0 3.68e-01 91.8% 86.5%
3497680 5054.1.1.63 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.61 47.0 2.93e-01 85.2% 15.6%
3630540 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.61 53.0 3.49e-01 100.0% 23.0%
3295705 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 44.0 3.47e-01 78.7% 41.5%
3284560 3016.1.1.19 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.60 44.0 3.94e-01 80.3% 57.8%
3263650 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 45.0 2.56e-01 85.2% 6.9%
4961372 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 41.0 3.85e-01 73.8% 83.7%
3517171 604.8.1.3 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 0.59 47.0 3.24e-01 86.9% 25.2%
3516510 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.59 47.0 3.78e-01 100.0% 44.5%
3391391 4177.1.1.16 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.59 44.0 2.81e-01 83.6% 15.2%
3734074 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 44.0 4.25e-01 82.0% 80.0%
3219908 109.4.1.80 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.59 43.0 3.09e-01 96.7% 27.6%
3782917 109.4.1.1289 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 0.59 50.0 3.10e-01 100.0% 41.0%
3611776 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 49.0 3.86e-01 100.0% 42.9%
4032976 3355.1.1.3 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › ABG_transport 0.58 49.0 2.95e-01 100.0% 13.1%
4022379 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 45.0 3.36e-01 85.2% 34.0%
3635933 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.58 49.0 4.69e-01 100.0% 97.3%
3410018 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.58 50.0 3.10e-01 100.0% 61.1%
5047025 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.57 43.0 3.92e-01 83.6% 69.4%
4984126 3396.1.1.0 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A 0.57 49.0 4.89e-01 100.0% 98.5%
3669948 109.4.1.1495 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 0.56 43.0 2.48e-01 85.2% 46.0%
4160733 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.56 48.0 3.39e-01 100.0% 94.8%
5071471 3003.1.1.1 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.56 45.0 3.73e-01 86.9% 57.1%
3179971 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 44.0 4.06e-01 86.9% 68.8%
4949665 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.55 40.0 3.68e-01 80.3% 63.5%
3399939 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 48.0 3.16e-01 98.4% 23.5%
2831995 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.55 47.0 4.59e-01 98.4% 88.4%
3922598 4120.1.1.43 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TSTD2_N 0.54 46.0 4.54e-01 95.1% 100.0%
3459468 292.1.1.1 a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.54 39.0 2.56e-01 82.0% 17.2%
3649913 5050.1.1.58 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.54 45.0 3.40e-01 100.0% 35.9%
5026028 3393.1.1.3 extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › DUF3311 0.54 45.0 4.50e-01 95.1% 93.8%
3408042 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 44.0 2.72e-01 88.5% 73.9%
3350558 205.1.1.19 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.54 43.0 3.51e-01 100.0% 47.0%
3274487 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.53 41.0 3.10e-01 90.2% 33.7%
3717340 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.53 40.0 2.86e-01 83.6% 41.0%
4061614 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 42.0 3.54e-01 88.5% 51.4%
3683611 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.52 41.0 3.76e-01 88.5% 65.9%
3348024 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.51 44.0 3.34e-01 96.7% 42.7%
4974011 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 36.0 3.60e-01 80.3% 73.8%
3890723 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 45.0 2.98e-01 100.0% 36.2%
3484687 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.51 41.0 2.94e-01 98.4% 82.1%
151381 604.16.1.2 alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › VWA_3_C 0.51 37.0 3.87e-01 88.5% 94.3%