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MW584169.1__QSM02932.1__PROPHIGD05-1_19__00019
Bact-VirMW584169.1__QSM02932.1__PROPHIGD05-1_19__00019
Identity
- Accession:
- MW584169 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 2813231
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: MW584169.1__QSM02921.1__PROPHIGD05-1_8__00008__D18-92
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.69 | 60.0 | 5.84e-01 | 95.9% | 98.8% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 46.0 | 3.84e-01 | 72.6% | 41.9% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 45.0 | 3.85e-01 | 72.6% | 47.9% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.64 | 48.0 | 4.89e-01 | 80.8% | 85.9% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 45.0 | 4.08e-01 | 75.3% | 68.4% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 49.0 | 4.31e-01 | 87.7% | 71.6% |
| 4d6gA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.60 | 43.0 | 3.59e-01 | 76.7% | 94.6% |
| 3weeA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 43.0 | 3.39e-01 | 76.7% | 87.1% |
| 1j6uA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 44.0 | 3.26e-01 | 100.0% | 28.7% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.58 | 40.0 | 3.54e-01 | 78.1% | 46.5% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 45.0 | 3.22e-01 | 100.0% | 26.9% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 47.0 | 3.90e-01 | 100.0% | 77.0% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.56 | 45.0 | 3.79e-01 | 94.5% | 82.1% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.56 | 44.0 | 4.02e-01 | 86.3% | 80.0% |
| 3d2uE01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 50.0 | 3.72e-01 | 100.0% | 96.3% |
| 2x49A01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.56 | 42.0 | 3.89e-01 | 82.2% | 97.9% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.55 | 45.0 | 3.66e-01 | 90.4% | 86.4% |
| 6e20A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.91e-01 | 98.6% | 80.3% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 44.0 | 4.03e-01 | 91.8% | 88.2% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.55 | 41.0 | 3.04e-01 | 79.5% | 65.6% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 48.0 | 3.95e-01 | 100.0% | 75.7% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 40.0 | 3.01e-01 | 79.5% | 58.7% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.54 | 41.0 | 4.05e-01 | 80.8% | 75.6% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 2.95e-01 | 100.0% | 77.3% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.54 | 34.0 | 4.00e-01 | 87.7% | 94.0% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 45.0 | 3.29e-01 | 100.0% | 37.3% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 37.0 | 3.80e-01 | 75.3% | 84.9% |
| 3mixA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 40.0 | 3.49e-01 | 87.7% | 65.8% |
| 2gqwA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 42.0 | 4.00e-01 | 98.6% | 75.3% |
| 2cy2A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 3.17e-01 | 89.0% | 98.9% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.51 | 36.0 | 2.95e-01 | 72.6% | 80.6% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.50 | 34.0 | 2.91e-01 | 71.2% | 82.7% |
| 2b5lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.57e-01 | 89.0% | 44.2% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3843748 | 220.1.1.48 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Jak1_Phl | 0.81 | 56.0 | 4.51e-01 | 74.0% | 39.3% |
| 3785687 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.73 | 52.0 | 4.43e-01 | 74.0% | 53.0% |
| 3558744 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.73 | 49.0 | 4.07e-01 | 74.0% | 40.8% |
| 4533094 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.73 | 49.0 | 4.01e-01 | 74.0% | 39.2% |
| 3796100 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.73 | 49.0 | 3.83e-01 | 74.0% | 34.0% |
| 3479701 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.72 | 49.0 | 4.16e-01 | 74.0% | 44.3% |
| 4459482 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.71 | 45.0 | 3.22e-01 | 75.3% | 21.9% |
| 3401931 | 220.1.1.184 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP | 0.68 | 43.0 | 3.93e-01 | 72.6% | 49.5% |
| 3479035 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 47.0 | 3.54e-01 | 72.6% | 31.4% |
| 4027872 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 43.0 | 3.90e-01 | 74.0% | 49.5% |
| 4930437 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.67 | 47.0 | 4.19e-01 | 74.0% | 52.4% |
| 4331825 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.65 | 46.0 | 3.30e-01 | 74.0% | 34.6% |
| 119245 | 252.3.1.1 ↗ | a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA | 0.64 | 48.0 | 4.89e-01 | 80.8% | 85.9% |
| 3277369 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 44.0 | 4.01e-01 | 71.2% | 58.9% |
| 1349783 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.63 | 45.0 | 4.08e-01 | 75.3% | 68.4% |
| 3475602 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 44.0 | 3.77e-01 | 74.0% | 56.5% |
| 3217673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 53.0 | 4.77e-01 | 98.6% | 72.4% |
| 3167076 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.61 | 43.0 | 4.43e-01 | 74.0% | 87.1% |
| 1346676 | 3347.1.1.1 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 | 0.61 | 49.0 | 4.31e-01 | 87.7% | 71.6% |
| 4024504 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 38.0 | 3.45e-01 | 71.2% | 47.0% |
| 3954641 | 220.1.1.254 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF27726 | 0.59 | 40.0 | 3.76e-01 | 71.2% | 75.8% |
| 3251263 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.59 | 46.0 | 2.92e-01 | 84.9% | 25.3% |
| 3934561 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.58 | 49.0 | 3.95e-01 | 100.0% | 83.1% |
| 4034136 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.58 | 47.0 | 3.19e-01 | 93.2% | 30.7% |
| 3206632 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.57 | 41.0 | 4.00e-01 | 78.1% | 74.1% |
| 3621467 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 46.0 | 3.39e-01 | 91.8% | 55.3% |
| 3705941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 47.0 | 4.65e-01 | 97.3% | 93.8% |
| 4350601 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.56 | 43.0 | 3.38e-01 | 82.2% | 67.3% |
| 3968348 | 77.2.1.5 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN_2 | 0.55 | 41.0 | 3.23e-01 | 80.8% | 40.6% |
| 3074400 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.55 | 38.0 | 3.46e-01 | 72.6% | 90.9% |
| 4988874 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.55 | 45.0 | 3.77e-01 | 93.2% | 90.8% |
| 6353 | 331.11.1.1 ↗ | a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 | 0.54 | 41.0 | 3.44e-01 | 80.8% | 47.6% |
| 3438132 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 45.0 | 4.06e-01 | 98.6% | 74.3% |
| 3947165 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 42.0 | 3.34e-01 | 86.3% | 44.0% |
| 3858796 | 5.1.3.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 | 0.53 | 43.0 | 2.90e-01 | 98.6% | 50.4% |
| 363983 | 234.1.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease | 0.52 | 39.0 | 3.56e-01 | 78.1% | 60.0% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 39.0 | 4.15e-01 | 80.8% | 98.3% |
| 4956725 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.52 | 46.0 | 3.45e-01 | 100.0% | 78.9% |
| 4998363 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 45.0 | 3.53e-01 | 100.0% | 95.8% |
| 4975431 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 38.0 | 3.57e-01 | 79.5% | 70.0% |
| 2404945 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 43.0 | 3.13e-01 | 98.6% | 95.6% |
| 3593376 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 42.0 | 3.97e-01 | 98.6% | 82.1% |