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MW584183.1__QST89837.1__PROPHIGD53-3_35__00034

Bact-Vir

MW584183.1__QST89837.1__PROPHIGD53-3_35__00034

Identity

Accession:
MW584183 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-90
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.81 58.0 6.29e-01 75.9% 93.3%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 45.0 4.23e-01 77.8% 51.5%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 52.0 5.18e-01 77.8% 73.7%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.69 47.0 4.07e-01 81.5% 45.3%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 44.0 4.16e-01 77.8% 56.1%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 42.0 3.92e-01 77.8% 52.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 42.0 3.94e-01 79.6% 53.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 42.0 4.04e-01 79.6% 59.4%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 43.0 3.43e-01 70.4% 78.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.62 44.0 3.69e-01 100.0% 43.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.62 46.0 4.26e-01 100.0% 62.0%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.61 50.0 3.26e-01 94.4% 55.8%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 41.0 2.95e-01 70.4% 77.2%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 39.0 3.72e-01 77.8% 53.7%
2zw5A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 41.0 3.23e-01 70.4% 92.4%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.60 41.0 2.98e-01 70.4% 54.3%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 45.0 2.94e-01 83.3% 54.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.31e-01 96.3% 80.6%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 43.0 2.74e-01 83.3% 51.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.61e-01 98.1% 66.1%
3bqxA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.11e-01 100.0% 32.4%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 2.96e-01 100.0% 90.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 39.0 3.89e-01 77.8% 83.9%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.54 45.0 3.45e-01 98.1% 57.1%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 3.14e-01 100.0% 37.2%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 40.0 3.07e-01 100.0% 32.8%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.25e-01 100.0% 39.5%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 2.80e-01 98.1% 22.1%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 34.0 3.33e-01 77.8% 59.0%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.17e-01 100.0% 38.8%
2rbbA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 3.05e-01 100.0% 35.7%
1tsjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 3.07e-01 100.0% 37.6%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.52 42.0 2.72e-01 98.1% 23.0%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.18e-01 100.0% 39.1%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.68e-01 98.1% 18.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.08e-01 100.0% 41.7%
5gxdA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 42.0 3.25e-01 98.1% 57.9%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 36.0 3.60e-01 100.0% 76.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.50 43.0 3.80e-01 100.0% 80.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 62.0 4.89e-01 79.6% 45.7%
4932876 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.77 58.0 4.45e-01 79.6% 39.1%
665 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 45.0 4.19e-01 77.8% 50.7%
3606500 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.70 52.0 5.03e-01 96.3% 71.7%
3702281 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.70 47.0 4.72e-01 77.8% 69.1%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 46.0 4.21e-01 79.6% 52.9%
3828070 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.68 43.0 4.36e-01 81.5% 63.6%
3346241 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.66 43.0 4.43e-01 79.6% 72.0%
3236367 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.66 56.0 4.18e-01 98.1% 60.0%
3989851 11.1.1.1339 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CFSR 0.66 47.0 3.46e-01 87.0% 28.3%
3894328 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 48.0 3.31e-01 100.0% 22.0%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 43.0 4.18e-01 79.6% 62.3%
2979129 919.1.1.1 few secondary structure elements › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal protein L36 › Ribosomal_L36 0.64 43.0 4.53e-01 100.0% 82.6%
3432156 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.63 47.0 4.68e-01 96.3% 78.2%
4544219 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.63 45.0 2.87e-01 75.9% 72.3%
5022840 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 40.0 3.50e-01 94.4% 42.4%
3311774 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 43.0 4.50e-01 100.0% 81.2%
3955812 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.61 54.0 4.52e-01 100.0% 78.5%
3925755 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 43.0 4.22e-01 75.9% 70.0%
4013660 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 51.0 3.08e-01 96.3% 47.7%
3268156 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.61 41.0 2.80e-01 70.4% 59.5%
3839254 601.52.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.60 49.0 2.98e-01 94.4% 55.5%
3801966 252.1.1.2 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 0.60 44.0 4.04e-01 100.0% 58.7%
1815428 3454.1.1.1 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.59 37.0 3.19e-01 75.9% 36.8%
5065641 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.03e-01 75.9% 52.0%
5081301 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.58 50.0 3.02e-01 100.0% 27.2%
4970370 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 41.0 4.10e-01 100.0% 75.9%
3425722 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.57 45.0 3.86e-01 94.4% 54.1%
3989855 706.2.1.8 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › CFSR 0.57 49.0 4.58e-01 98.1% 91.4%
3685243 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 51.0 3.23e-01 100.0% 50.7%
3477683 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.06e-01 100.0% 17.8%
3646748 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.57 41.0 3.27e-01 88.9% 35.8%
4011458 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.42e-01 96.3% 60.6%
3377637 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.94e-01 90.7% 32.2%
4671862 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.56 46.0 3.21e-01 96.3% 52.4%
5000313 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 43.0 2.90e-01 83.3% 60.0%
3829068 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 49.0 3.20e-01 98.1% 26.5%
3788312 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 46.0 2.57e-01 88.9% 22.6%
3695460 247.1.1.23 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2+Lactamase_B_4 0.56 41.0 2.32e-01 79.6% 21.6%
3262248 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.55 48.0 2.90e-01 100.0% 39.0%
1160809 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.55 40.0 3.68e-01 100.0% 58.4%
4941547 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.55 39.0 3.18e-01 75.9% 93.0%
3482507 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 44.0 2.66e-01 100.0% 92.0%
3957726 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 43.0 3.08e-01 92.6% 65.6%
3634325 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.54 45.0 2.80e-01 96.3% 16.2%
3686359 5.1.4.155 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.54 44.0 2.72e-01 98.1% 16.9%
3197065 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.54 45.0 2.81e-01 96.3% 16.7%
5028909 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 43.0 2.54e-01 92.6% 51.4%
5082853 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 43.0 3.28e-01 92.6% 76.9%
4946923 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 43.0 2.85e-01 94.4% 38.0%
4278906 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.52 47.0 2.98e-01 100.0% 31.9%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 37.0 3.57e-01 79.6% 77.8%
3605569 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.51 41.0 2.59e-01 98.1% 16.3%
167222 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.51 35.0 3.39e-01 88.9% 65.6%
4156629 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.50 42.0 3.51e-01 100.0% 67.6%
1226705 4036.1.1.1 a+b two layers › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Anthrax_toxA 0.50 41.0 3.24e-01 96.3% 86.5%
3179178 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 44.0 2.79e-01 100.0% 49.5%
4238238 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 45.0 2.85e-01 100.0% 30.4%
3389772 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.50 41.0 3.16e-01 100.0% 78.6%