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MW584186.1__QST89945.1__PROPHIGD108-1_9__00008

Bact-Vir

MW584186.1__QST89945.1__PROPHIGD108-1_9__00008

Identity

Accession:
MW584186 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-72
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.87 82.0 7.81e-01 100.0% 92.4%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.76 69.0 5.83e-01 100.0% 92.0%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.76 69.0 5.48e-01 100.0% 79.1%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.73 66.0 5.22e-01 100.0% 88.6%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.70 63.0 5.56e-01 100.0% 89.0%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.69 61.0 5.28e-01 100.0% 95.5%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 53.0 5.41e-01 100.0% 90.9%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 57.0 5.63e-01 98.6% 89.0%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 53.0 5.36e-01 100.0% 87.0%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 53.0 3.89e-01 100.0% 33.3%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 50.0 4.50e-01 100.0% 60.2%
6ku8A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 5.11e-01 98.6% 88.4%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 56.0 5.16e-01 100.0% 76.4%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 47.0 4.92e-01 100.0% 90.6%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 55.0 4.81e-01 100.0% 73.1%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 55.0 4.71e-01 100.0% 67.6%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 55.0 4.72e-01 100.0% 72.2%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 55.0 4.70e-01 100.0% 71.8%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 54.0 4.96e-01 100.0% 76.7%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 54.0 4.66e-01 100.0% 74.3%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.83e-01 98.6% 77.5%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 53.0 4.63e-01 100.0% 74.8%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 53.0 4.62e-01 100.0% 72.9%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 53.0 4.52e-01 100.0% 72.3%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 50.0 4.64e-01 100.0% 77.4%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.58 51.0 3.95e-01 100.0% 74.1%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 48.0 4.58e-01 98.6% 100.0%
7f8aA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 46.0 3.54e-01 94.3% 41.9%
7xx8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 3.86e-01 77.1% 66.7%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 39.0 3.27e-01 95.7% 42.4%
1i6aA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 34.0 3.04e-01 94.3% 39.8%
1zq9A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.42e-01 94.3% 42.2%
2m05A00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.54 40.0 4.15e-01 80.0% 96.9%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.54 34.0 3.65e-01 97.1% 77.2%
1ei6A02 3.30.1360.110 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain 2, Phosphonoacetate Hydrolase 0.53 46.0 3.98e-01 98.6% 80.2%
3aljA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 38.0 3.04e-01 80.0% 75.0%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.52 38.0 3.27e-01 82.9% 90.5%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 43.0 3.43e-01 100.0% 44.5%
5gjnA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 43.0 3.43e-01 95.7% 45.5%
5uznA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 34.0 3.30e-01 78.6% 60.0%
2nvaA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.51 42.0 3.51e-01 94.3% 53.9%
2dhsA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.31e-01 78.6% 57.1%
1d7kB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.50 42.0 3.49e-01 95.7% 52.6%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.15e-01 88.6% 52.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
373012 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.87 82.0 7.83e-01 100.0% 91.3%
4180783 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.86 81.0 7.35e-01 100.0% 85.6%
3304930 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.83 77.0 6.50e-01 100.0% 94.5%
3653680 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.82 77.0 5.43e-01 100.0% 54.7%
3817355 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.82 77.0 6.09e-01 100.0% 80.0%
5035541 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.81 76.0 6.75e-01 100.0% 95.8%
5079450 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 75.0 5.84e-01 100.0% 67.9%
5023996 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 74.0 6.21e-01 100.0% 93.8%
4954540 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 73.0 6.22e-01 100.0% 91.8%
4950776 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.80 73.0 5.71e-01 100.0% 80.7%
5070577 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 72.0 6.15e-01 100.0% 95.5%
4972120 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.79 73.0 6.17e-01 100.0% 90.9%
4982523 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.78 71.0 5.95e-01 100.0% 87.0%
4995779 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 71.0 5.48e-01 100.0% 97.3%
2105336 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.78 70.0 5.44e-01 100.0% 63.8%
4970789 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.78 70.0 5.51e-01 100.0% 72.9%
5077279 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.77 71.0 5.83e-01 100.0% 82.5%
4972117 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 69.0 5.77e-01 100.0% 85.8%
5022429 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.77 69.0 5.67e-01 100.0% 80.8%
5006048 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.77 69.0 5.92e-01 100.0% 86.4%
179 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.76 69.0 5.83e-01 100.0% 92.0%
5042221 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 68.0 5.96e-01 100.0% 95.2%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 70.0 6.38e-01 100.0% 92.2%
5083501 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 68.0 6.27e-01 100.0% 95.6%
4932437 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.76 69.0 6.40e-01 97.1% 97.6%
3279326 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 65.0 5.94e-01 95.7% 97.8%
4928024 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 67.0 5.45e-01 100.0% 64.8%
4408612 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 53.0 5.57e-01 100.0% 88.3%
4990496 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 66.0 5.58e-01 100.0% 86.1%
4037113 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 56.0 5.85e-01 100.0% 92.1%
4328178 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 54.0 5.71e-01 100.0% 93.3%
3934702 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 65.0 5.15e-01 100.0% 74.3%
4632972 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.72 59.0 5.98e-01 98.6% 94.1%
5011405 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 56.0 5.60e-01 100.0% 84.3%
4582116 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.71 54.0 5.61e-01 98.6% 89.2%
3598242 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 62.0 4.93e-01 100.0% 74.5%
3619452 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 62.0 4.82e-01 100.0% 76.8%
178 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.70 63.0 5.24e-01 100.0% 74.2%
5016524 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 63.0 4.94e-01 100.0% 64.1%
184578 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.69 61.0 4.76e-01 100.0% 70.8%
3375062 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.68 60.0 4.64e-01 100.0% 73.8%
4396079 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 50.0 5.28e-01 100.0% 91.7%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 57.0 5.28e-01 100.0% 72.2%
3220176 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 59.0 4.65e-01 100.0% 76.0%
2475125 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.66 60.0 4.59e-01 100.0% 90.5%
4990434 1.1.9.30 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 0.66 48.0 4.72e-01 77.1% 96.0%
4999514 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 56.0 4.46e-01 100.0% 81.3%
4981269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 54.0 4.89e-01 100.0% 69.5%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 38.0 3.51e-01 98.6% 45.6%
3602381 4.1.1.403 beta barrels › SH3 › SH3 › SH3 › UPF0179 0.63 46.0 4.52e-01 77.1% 94.7%
3219717 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 47.0 4.31e-01 78.6% 64.4%
4290531 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 48.0 4.45e-01 82.9% 68.9%
3801974 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 45.0 3.89e-01 77.1% 89.1%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 56.0 4.80e-01 100.0% 91.8%
3412875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 45.0 3.92e-01 77.1% 88.6%
4587424 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 55.0 3.87e-01 100.0% 33.6%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.61 42.0 4.11e-01 100.0% 65.3%
3565862 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 55.0 3.64e-01 100.0% 27.5%
3392873 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 55.0 3.82e-01 100.0% 32.9%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 53.0 4.80e-01 100.0% 71.6%
3409561 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 55.0 3.80e-01 100.0% 34.3%
4681800 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 54.0 3.79e-01 100.0% 35.0%
3390983 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 53.0 3.61e-01 100.0% 31.1%
3965428 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 51.0 4.53e-01 100.0% 73.3%
4259249 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 49.0 4.56e-01 100.0% 94.7%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 48.0 4.47e-01 100.0% 95.8%
4923979 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.57 46.0 3.42e-01 90.0% 62.0%
4969149 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.26e-01 95.7% 66.7%
3760714 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 40.0 4.01e-01 77.1% 75.7%
3389148 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 46.0 3.26e-01 100.0% 33.1%
3407037 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 45.0 3.29e-01 100.0% 34.5%
4527501 3448.1.1.0 beta duplicates or obligate multimers › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain 0.53 38.0 3.12e-01 80.0% 38.6%
3510772 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 44.0 3.43e-01 100.0% 72.6%
3274650 1.1.7.1 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Orn_DAP_Arg_deC 0.52 43.0 3.30e-01 94.3% 39.4%
None 0.51 43.0 3.03e-01 100.0% 40.0%
4074228 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 40.0 2.79e-01 90.0% 68.4%
4401956 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 38.0 3.44e-01 80.0% 65.3%