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MW584189.1__QSM04034.1__PROPHIGD54-1_60__00060
Bact-VirMW584189.1__QSM04034.1__PROPHIGD54-1_60__00060
Identity
- Accession:
- MW584189 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 2813269
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-93
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23841.3 best | Phage_tail_terminator_2 | 75.0 | 8.30e-21 | 100.0% | 56.4% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.75 | 69.0 | 5.72e-01 | 100.0% | 62.5% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.75 | 67.0 | 4.94e-01 | 100.0% | 53.8% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 47.0 | 4.20e-01 | 100.0% | 56.2% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.24e-01 | 100.0% | 57.9% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.60 | 53.0 | 3.88e-01 | 100.0% | 73.6% |
| 2bjoA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 47.0 | 4.49e-01 | 100.0% | 75.5% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 36.0 | 3.52e-01 | 95.0% | 53.3% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 51.0 | 3.65e-01 | 100.0% | 73.7% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 39.0 | 2.72e-01 | 70.0% | 48.1% |
| 3i83A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 3.78e-01 | 100.0% | 88.1% |
| 5mghA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 48.0 | 3.28e-01 | 100.0% | 79.2% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 34.0 | 2.53e-01 | 100.0% | 20.9% |
| 4yxqB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 47.0 | 3.42e-01 | 100.0% | 54.8% |
| 6fnnB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 43.0 | 3.60e-01 | 86.3% | 94.4% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 43.0 | 3.62e-01 | 95.0% | 94.6% |
| 1jeyA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 37.0 | 2.80e-01 | 78.8% | 59.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4002369 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.71 | 49.0 | 4.73e-01 | 100.0% | 63.3% |
| 4958720 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.61 | 53.0 | 4.72e-01 | 100.0% | 70.0% |
| 4970596 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 48.0 | 3.92e-01 | 86.3% | 62.7% |
| 5029815 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.59 | 44.0 | 3.34e-01 | 82.5% | 66.0% |
| 3996993 | 872.1.1.6 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › TIL_2 | 0.58 | 36.0 | 4.02e-01 | 88.7% | 81.7% |
| 5073773 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 45.0 | 4.03e-01 | 100.0% | 58.3% |
| 3255548 | 327.11.2.24 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 | 0.57 | 43.0 | 4.39e-01 | 98.8% | 81.2% |
| 1919434 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.57 | 37.0 | 3.63e-01 | 77.5% | 61.6% |
| 3164849 | 3016.1.1.11 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA | 0.56 | 41.0 | 3.81e-01 | 100.0% | 60.0% |
| 5049557 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.56 | 49.0 | 3.71e-01 | 100.0% | 76.6% |
| 3714745 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 46.0 | 3.91e-01 | 92.5% | 81.5% |
| 4938455 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.55 | 47.0 | 3.70e-01 | 98.8% | 71.4% |
| 4987949 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.55 | 43.0 | 3.58e-01 | 86.3% | 60.7% |
| None | — | 0.55 | 47.0 | 3.72e-01 | 100.0% | 70.5% | |
| 4464235 | 295.1.1.30 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Cyto_heme_lyase | 0.55 | 47.0 | 3.75e-01 | 100.0% | 70.2% |
| 3981236 | 5084.5.4.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › TraF_2 | 0.55 | 45.0 | 3.21e-01 | 97.5% | 94.8% |
| 3835676 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.54 | 46.0 | 3.56e-01 | 100.0% | 74.0% |
| 3548433 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 46.0 | 3.56e-01 | 96.2% | 92.1% |
| 3664751 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.53 | 44.0 | 4.13e-01 | 91.3% | 100.0% |
| 3634542 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 46.0 | 3.69e-01 | 100.0% | 73.3% |
| 3939992 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 41.0 | 3.78e-01 | 91.3% | 63.6% |
| 4307364 | 878.1.1.6 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › PF29774 | 0.52 | 45.0 | 3.99e-01 | 100.0% | 65.8% |
| 4642171 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 38.0 | 2.92e-01 | 82.5% | 61.9% |
| 3392889 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.50 | 43.0 | 3.06e-01 | 100.0% | 72.3% |
| 3601530 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.50 | 43.0 | 3.05e-01 | 100.0% | 84.0% |
D2
medium
residues 94-156
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23841.3 best | Phage_tail_terminator_2 | 50.0 | 4.20e-13 | 90.5% | 38.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.67 | 44.0 | 3.81e-01 | 82.5% | 42.6% |
| 5ygbA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 43.0 | 3.45e-01 | 79.4% | 87.2% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 45.0 | 2.92e-01 | 88.9% | 19.0% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 41.0 | 3.11e-01 | 81.0% | 65.7% |
| 3ozqA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 32.0 | 2.42e-01 | 81.0% | 21.2% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.51 | 33.0 | 3.41e-01 | 82.5% | 71.9% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.51 | 36.0 | 3.42e-01 | 82.5% | 62.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4792915 | 11.1.1.607 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PCDH15_12th | 0.52 | 38.0 | 2.96e-01 | 82.5% | 33.3% |
| 3991473 | 2.1.1.138 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ATG11 | 0.51 | 38.0 | 3.30e-01 | 82.5% | 87.6% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 35.0 | 3.40e-01 | 79.4% | 64.3% |
| 2663914 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.50 | 40.0 | 3.28e-01 | 87.3% | 83.8% |