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MW584190.1__QSM04062.1__PROPHIGD03_1_10__00010

Bact-Vir

MW584190.1__QSM04062.1__PROPHIGD03_1_10__00010

Identity

Accession:
MW584190 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 54.0 4.69e-01 72.0% 48.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 50.0 4.21e-01 76.0% 43.8%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 50.0 4.14e-01 77.3% 54.2%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 47.0 4.04e-01 72.0% 45.7%
1ixlA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 45.0 3.79e-01 70.7% 82.2%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.66 46.0 3.86e-01 72.0% 61.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 4.45e-01 77.3% 66.3%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 43.0 3.60e-01 70.7% 40.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 52.0 4.91e-01 93.3% 82.1%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.64 46.0 3.92e-01 76.0% 60.8%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 44.0 3.24e-01 70.7% 66.3%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.63 49.0 4.67e-01 85.3% 82.2%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 45.0 3.70e-01 74.7% 53.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 46.0 3.91e-01 90.7% 48.3%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.62 49.0 3.98e-01 86.7% 95.2%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 46.0 3.88e-01 77.3% 52.5%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.62 48.0 4.59e-01 85.3% 80.7%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.61 47.0 4.55e-01 82.7% 88.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.60 46.0 3.90e-01 82.7% 72.7%
4eeeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.64e-01 73.3% 82.6%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 40.0 3.52e-01 77.3% 43.7%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 45.0 3.56e-01 84.0% 41.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 45.0 3.70e-01 82.7% 86.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.84e-01 76.0% 81.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.62e-01 81.3% 97.6%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 42.0 3.67e-01 80.0% 73.7%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.56 47.0 3.71e-01 97.3% 87.8%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.07e-01 100.0% 17.6%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 41.0 3.40e-01 78.7% 70.6%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.31e-01 77.3% 47.7%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.55 45.0 4.53e-01 96.0% 100.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.08e-01 73.3% 87.3%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.79e-01 84.0% 23.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 40.0 3.16e-01 77.3% 51.3%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 40.0 2.76e-01 78.7% 54.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.95e-01 90.7% 75.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 4.15e-01 74.7% 100.0%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 45.0 3.20e-01 93.3% 34.5%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 2.63e-01 73.3% 38.9%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.32e-01 70.7% 87.9%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 35.0 3.07e-01 73.3% 42.0%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 36.0 3.36e-01 73.3% 57.0%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.67e-01 96.0% 61.0%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 45.0 4.00e-01 98.7% 80.2%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.71e-01 81.3% 94.1%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.29e-01 78.7% 84.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.50 35.0 3.50e-01 72.0% 79.5%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3216382 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.82 57.0 4.85e-01 72.0% 47.0%
4032084 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.72 53.0 4.89e-01 77.3% 62.1%
3886411 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 51.0 4.19e-01 77.3% 41.5%
3885625 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.72 53.0 4.10e-01 77.3% 47.1%
3554105 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 49.0 3.97e-01 70.7% 49.6%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 46.0 4.21e-01 70.7% 51.6%
3582821 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.71 51.0 4.77e-01 77.3% 62.2%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 50.0 3.97e-01 77.3% 40.7%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 46.0 3.67e-01 76.0% 36.0%
3998194 220.1.1.68 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.66 47.0 3.91e-01 76.0% 44.8%
4538466 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.65 47.0 3.94e-01 76.0% 56.2%
3740262 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 3.95e-01 77.3% 55.4%
3217638 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 41.0 4.16e-01 70.7% 64.0%
3590547 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.64 45.0 3.75e-01 73.3% 80.0%
4528719 4.1.1.438 beta barrels › SH3 › SH3 › SH3 › PF27440 0.63 43.0 4.62e-01 70.7% 87.7%
3173787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.80e-01 74.7% 57.5%
3744194 220.1.1.154 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.62 43.0 3.50e-01 72.0% 42.1%
5081878 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 48.0 3.07e-01 85.3% 50.8%
4157358 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 47.0 4.71e-01 89.3% 100.0%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 49.0 5.07e-01 92.0% 100.0%
4336488 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 44.0 4.59e-01 81.3% 95.7%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 45.0 4.03e-01 82.7% 84.5%
4527067 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.59 47.0 3.30e-01 88.0% 29.0%
4137630 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 45.0 4.66e-01 84.0% 90.0%
5046099 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 41.0 3.30e-01 72.0% 63.4%
3171938 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.59 41.0 3.63e-01 73.3% 79.8%
3479394 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.49e-01 77.3% 42.2%
3471801 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.55e-01 77.3% 45.2%
4102441 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.59 50.0 4.03e-01 97.3% 89.0%
3725709 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.54e-01 72.0% 75.5%
4163583 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.58 46.0 4.60e-01 92.0% 97.5%
4996269 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 46.0 3.29e-01 86.7% 76.4%
3474122 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.57 41.0 2.65e-01 76.0% 16.3%
4978550 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 40.0 3.14e-01 74.7% 64.2%
3505384 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.19e-01 94.7% 32.8%
1758788 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 38.0 3.17e-01 76.0% 42.3%
4011254 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 47.0 3.22e-01 97.3% 62.6%
5015520 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 45.0 3.27e-01 88.0% 89.5%
4930337 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.56 42.0 3.43e-01 81.3% 80.7%
3616717 5.1.4.407 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.55 47.0 3.02e-01 100.0% 86.9%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.55 39.0 4.26e-01 74.7% 93.3%
3507415 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 3.45e-01 93.3% 58.9%
5794 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.55 40.0 3.16e-01 77.3% 51.3%
3387958 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.54 36.0 2.94e-01 72.0% 34.2%
4963369 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 43.0 3.41e-01 89.3% 92.9%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.53 44.0 3.76e-01 94.7% 93.2%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 47.0 3.96e-01 100.0% 77.7%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 2.84e-01 89.3% 20.4%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.51e-01 81.3% 58.9%
3380327 5.1.10.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 0.52 36.0 3.32e-01 72.0% 81.0%
3479661 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 38.0 3.45e-01 96.0% 57.3%