←Back to structures

MW584191.1__QST90076.1__PROPHIGD05-2_2__00001

Bact-Vir

MW584191.1__QST90076.1__PROPHIGD05-2_2__00001

Identity

Accession:
MW584191 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_prophiGD05-2

TaxID: 2813232

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 49.0 4.64e-01 73.8% 54.2%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.70 60.0 5.40e-01 100.0% 72.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 52.0 4.88e-01 100.0% 66.7%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.64 45.0 4.58e-01 80.3% 76.7%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 54.0 5.12e-01 100.0% 85.1%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.63 46.0 4.27e-01 95.1% 59.8%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 50.0 4.92e-01 98.4% 82.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 47.0 4.54e-01 88.5% 78.7%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 53.0 5.04e-01 100.0% 88.9%
3boqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 3.80e-01 88.5% 80.7%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.60 46.0 4.10e-01 85.2% 91.2%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.79e-01 96.7% 92.4%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.58 49.0 4.55e-01 100.0% 81.7%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 3.86e-01 86.9% 75.3%
1iq0A02 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.56 42.0 3.75e-01 86.9% 78.0%
3gdeA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.54 42.0 2.88e-01 85.2% 40.6%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 45.0 3.50e-01 98.4% 85.3%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 48.0 3.52e-01 100.0% 44.5%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 40.0 3.99e-01 86.9% 95.4%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 42.0 3.31e-01 93.4% 79.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979322 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 59.0 5.62e-01 90.2% 68.6%
2393452 101.43.1.1 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.78 60.0 6.24e-01 88.5% 89.3%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.72e-01 100.0% 100.0%
3609939 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.77 60.0 5.02e-01 100.0% 49.5%
3980764 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 5.76e-01 90.2% 100.0%
5070907 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 53.0 5.90e-01 96.7% 100.0%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 59.0 6.15e-01 91.8% 92.7%
3960420 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 63.0 5.00e-01 100.0% 45.6%
3621273 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.75 59.0 6.16e-01 93.4% 94.5%
5079851 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 55.0 5.56e-01 96.7% 80.0%
4978898 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 52.0 5.70e-01 73.8% 100.0%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 59.0 5.66e-01 100.0% 75.7%
5006610 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.67e-01 100.0% 81.7%
3575777 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.74 56.0 6.10e-01 96.7% 100.0%
3724068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 6.40e-01 100.0% 100.0%
149489 101.1.1.95 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like 0.73 47.0 4.30e-01 73.8% 50.0%
3958338 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.73 51.0 5.58e-01 93.4% 100.0%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.64e-01 100.0% 98.0%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.72 51.0 5.49e-01 95.1% 92.0%
3958041 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 51.0 5.05e-01 95.1% 72.3%
3962579 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 4.50e-01 100.0% 40.7%
4883888 102.1.1.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › BAF 0.70 60.0 5.43e-01 100.0% 72.7%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 62.0 5.92e-01 100.0% 97.1%
3960847 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.68 57.0 4.51e-01 95.1% 61.5%
4952347 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 56.0 5.05e-01 95.1% 100.0%
5053360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 57.0 5.19e-01 100.0% 89.4%
4501343 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 52.0 5.50e-01 88.5% 96.4%
3401720 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.21e-01 72.1% 58.7%
4953748 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 5.26e-01 100.0% 98.7%
3777065 101.1.1.89 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.63 52.0 5.16e-01 100.0% 92.2%
5065894 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.61 46.0 4.08e-01 80.3% 83.5%
5067711 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 49.0 3.45e-01 100.0% 71.7%
4084728 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.54 41.0 3.62e-01 90.2% 78.1%
5079633 7094.1.1.4 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.50 35.0 3.24e-01 96.7% 54.1%