←Back to structures

MW584195.1__QSM04166.1__PROPHIGD51-2_28__00028

Bact-Vir

MW584195.1__QSM04166.1__PROPHIGD51-2_28__00028

Identity

Accession:
MW584195 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_prophiGD51-2

TaxID: 2813267

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-121
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.70 52.0 5.05e-01 79.7% 74.0%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 50.0 4.08e-01 94.2% 44.6%
1ekbB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 51.0 4.36e-01 85.5% 67.0%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 49.0 4.22e-01 85.5% 62.8%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 4.28e-01 85.5% 61.1%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.22e-01 94.2% 52.2%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 4.28e-01 87.0% 63.4%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 4.18e-01 87.0% 64.2%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 4.14e-01 85.5% 58.5%
5lpeB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 4.40e-01 85.5% 62.4%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 4.29e-01 87.0% 64.4%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 3.98e-01 85.5% 63.1%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 48.0 4.15e-01 85.5% 62.7%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.62 50.0 4.23e-01 92.8% 74.0%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 48.0 4.18e-01 85.5% 66.4%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 45.0 3.79e-01 81.2% 89.7%
1eq9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 49.0 4.25e-01 87.0% 65.7%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 48.0 4.11e-01 87.0% 61.6%
7pzoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 47.0 4.32e-01 87.0% 70.8%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.95e-01 79.7% 100.0%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 47.0 4.12e-01 85.5% 61.7%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 47.0 4.07e-01 87.0% 70.6%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.08e-01 87.0% 67.3%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 49.0 4.22e-01 95.7% 96.5%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 3.95e-01 87.0% 63.3%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 48.0 3.76e-01 94.2% 70.7%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 3.91e-01 87.0% 63.4%
1p3cA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 44.0 3.88e-01 87.0% 65.5%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 44.0 3.91e-01 87.0% 63.6%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.57 47.0 4.22e-01 92.8% 83.7%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.37e-01 98.6% 69.5%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.78e-01 81.2% 98.0%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 44.0 3.17e-01 87.0% 40.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 41.0 3.58e-01 95.7% 51.9%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.90e-01 100.0% 96.5%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.68e-01 84.1% 100.0%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.56 45.0 4.34e-01 92.8% 93.8%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.93e-01 100.0% 61.4%
2ei9A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 44.0 3.15e-01 88.4% 49.5%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.54 42.0 3.33e-01 87.0% 54.8%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 40.0 2.95e-01 84.1% 75.7%
1k1yB02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 3.05e-01 94.2% 33.3%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.53 45.0 4.05e-01 100.0% 71.6%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.52 39.0 2.90e-01 84.1% 32.4%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 4.22e-01 100.0% 81.8%
2dazA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 39.0 3.39e-01 85.5% 80.4%
6kxdA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 39.0 2.75e-01 87.0% 96.4%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 2.92e-01 89.9% 33.5%
7kpsB01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.07e-01 91.3% 35.2%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.15e-01 98.6% 86.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4273561 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.71 61.0 4.88e-01 94.2% 54.1%
4951165 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.64 48.0 5.28e-01 89.9% 100.0%
3511450 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 47.0 3.21e-01 79.7% 27.3%
4057590 1.1.5.86 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.64 54.0 4.25e-01 92.8% 83.6%
4992631 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.63 52.0 4.80e-01 94.2% 70.0%
3506893 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 50.0 3.28e-01 87.0% 34.6%
None — 0.61 49.0 3.29e-01 87.0% 27.0%
3940850 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 49.0 4.80e-01 92.8% 81.3%
3503641 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 48.0 3.54e-01 87.0% 39.7%
3505198 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 48.0 3.47e-01 87.0% 39.5%
4988028 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 48.0 4.18e-01 89.9% 100.0%
3484132 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 46.0 3.63e-01 88.4% 81.2%
3989936 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 45.0 3.97e-01 85.5% 75.5%
3256399 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.59 50.0 4.07e-01 94.2% 84.6%
3719123 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.59 48.0 3.07e-01 91.3% 54.9%
3602381 4.1.1.403 ↗ beta barrels › SH3 › SH3 › SH3 › UPF0179 0.59 44.0 4.34e-01 82.6% 100.0%
3518574 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 46.0 3.60e-01 87.0% 43.2%
3548075 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 45.0 3.15e-01 88.4% 28.2%
4379553 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 44.0 3.69e-01 85.5% 79.2%
3933041 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.92e-01 94.2% 83.0%
3512127 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.57 47.0 3.98e-01 91.3% 75.7%
3946833 1.1.16.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Phage_GPO 0.57 43.0 3.58e-01 85.5% 67.4%
3189683 331.3.1.46 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 0.57 46.0 3.38e-01 92.8% 85.9%
1682 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.57 49.0 4.09e-01 100.0% 83.3%
3786658 11.1.1.625 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › OST48_MD 0.56 46.0 3.74e-01 92.8% 72.1%
4958534 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 42.0 3.92e-01 82.6% 100.0%
3275765 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 38.0 3.38e-01 91.3% 45.5%
4930499 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 42.0 2.95e-01 82.6% 38.7%
4014364 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 42.0 3.11e-01 87.0% 41.8%
3268156 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.55 43.0 3.26e-01 87.0% 62.7%
3219410 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.83e-01 95.7% 53.8%
4964846 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.55 41.0 3.44e-01 82.6% 74.6%
4001275 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.55 43.0 3.18e-01 88.4% 50.7%
3634800 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.69e-01 84.1% 85.7%
3940452 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 43.0 3.57e-01 92.8% 47.7%
3593399 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 41.0 3.62e-01 85.5% 82.7%
3510271 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.95e-01 100.0% 62.5%
5083763 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.79e-01 94.2% 80.9%
3496425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 43.0 3.41e-01 91.3% 42.0%
3731356 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 39.0 3.31e-01 85.5% 88.9%
3220599 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.84e-01 100.0% 61.0%
3735309 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.63e-01 82.6% 96.7%
3224219 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.18e-01 89.9% 60.6%
3886633 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 45.0 3.90e-01 98.6% 85.5%
3689766 11.1.1.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer 0.52 46.0 3.66e-01 100.0% 60.0%
4010912 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 37.0 3.18e-01 79.7% 86.9%
3502343 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.52 41.0 3.74e-01 91.3% 68.7%
185448 3341.1.1.0 ↗ 0.51 41.0 3.81e-01 91.3% 69.6%
3622363 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 39.0 3.53e-01 84.1% 96.0%
3856053 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.50 41.0 3.79e-01 94.2% 96.8%
4081839 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.50 43.0 3.68e-01 97.1% 60.2%
3477183 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.50 41.0 3.37e-01 91.3% 74.6%
3225341 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 38.0 2.66e-01 84.1% 27.8%