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MW584201.1__QSM04595.1__PROPHIGD08-3_74__00074

Bact-Vir

MW584201.1__QSM04595.1__PROPHIGD08-3_74__00074

Identity

Accession:
MW584201 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-140
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.66 61.0 5.38e-01 100.0% 97.8%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.40e-01 100.0% 92.5%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.24e-01 100.0% 88.7%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 59.0 4.99e-01 100.0% 82.5%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 58.0 5.17e-01 100.0% 88.7%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.64 58.0 5.13e-01 100.0% 92.8%
3h2gA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 46.0 3.30e-01 76.0% 40.1%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.63 58.0 5.02e-01 100.0% 91.7%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 57.0 5.19e-01 100.0% 92.1%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 5.15e-01 100.0% 97.6%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 57.0 5.20e-01 100.0% 90.4%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 4.84e-01 100.0% 83.1%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 5.06e-01 100.0% 94.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 37.0 4.44e-01 88.5% 92.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 4.17e-01 100.0% 51.5%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 4.49e-01 100.0% 85.9%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 54.0 4.56e-01 100.0% 88.0%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 4.98e-01 100.0% 94.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.61 38.0 3.51e-01 70.8% 49.2%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 4.93e-01 99.0% 90.9%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.53e-01 95.8% 99.3%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 54.0 4.64e-01 100.0% 88.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 55.0 4.80e-01 100.0% 80.3%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.97e-01 100.0% 97.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.60 32.0 4.01e-01 70.8% 89.3%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 52.0 4.77e-01 100.0% 89.9%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.59 51.0 3.67e-01 100.0% 53.1%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 52.0 4.55e-01 100.0% 98.0%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.59 53.0 4.09e-01 100.0% 94.8%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 51.0 4.85e-01 100.0% 100.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.00e-01 100.0% 52.4%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.27e-01 100.0% 21.9%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 44.0 3.39e-01 80.2% 63.7%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 39.0 3.39e-01 72.9% 88.6%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.55 33.0 4.01e-01 87.5% 96.6%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.90e-01 94.8% 60.8%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 49.0 4.00e-01 100.0% 67.2%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 3.13e-01 100.0% 21.7%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.15e-01 100.0% 23.0%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 49.0 3.43e-01 100.0% 34.3%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 47.0 3.60e-01 100.0% 88.3%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 40.0 3.19e-01 81.2% 70.4%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.53 46.0 4.11e-01 97.9% 87.8%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.13e-01 75.0% 79.7%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 36.0 3.31e-01 75.0% 86.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.76e-01 86.5% 98.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3764790 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 61.0 6.22e-01 97.9% 93.7%
3432106 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.70 58.0 5.36e-01 99.0% 70.5%
3935161 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 57.0 5.60e-01 100.0% 81.0%
3961892 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.70 64.0 5.56e-01 99.0% 89.3%
3394181 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.69 63.0 4.07e-01 99.0% 31.6%
3584167 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.69 53.0 4.83e-01 99.0% 60.8%
3930653 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.69 56.0 5.84e-01 100.0% 94.4%
3957821 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.69 64.0 5.73e-01 100.0% 95.3%
3977502 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.69 63.0 5.69e-01 100.0% 88.5%
2130817 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.68 56.0 4.49e-01 97.9% 45.7%
1558628 243.1.1.15 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.68 62.0 5.46e-01 100.0% 93.6%
3962739 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.68 63.0 5.34e-01 100.0% 80.7%
3962486 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.68 62.0 5.27e-01 100.0% 79.2%
3936676 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 55.0 5.60e-01 96.9% 90.5%
3588474 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.67 61.0 5.68e-01 100.0% 97.5%
3515333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 55.0 5.73e-01 100.0% 97.8%
3447011 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.66 57.0 4.77e-01 99.0% 55.2%
4021528 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 59.0 5.17e-01 100.0% 92.4%
3241166 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 58.0 5.03e-01 100.0% 67.3%
4254866 243.1.1.66 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_5th 0.65 58.0 5.34e-01 99.0% 92.0%
1146698 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.64 58.0 5.10e-01 100.0% 92.9%
3286818 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 54.0 4.93e-01 94.8% 100.0%
3937044 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 55.0 5.59e-01 100.0% 97.9%
3724634 243.1.1.63 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.62 56.0 4.95e-01 100.0% 91.4%
3689197 3863.1.1.1 beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 0.62 45.0 3.63e-01 76.0% 69.4%
3971296 243.1.1.5 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 0.62 55.0 5.01e-01 100.0% 91.5%
3870424 3863.1.1.1 beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 0.61 45.0 3.35e-01 76.0% 56.9%
5009713 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.61 55.0 4.63e-01 100.0% 90.6%
3960625 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 55.0 4.71e-01 100.0% 89.3%
4020985 3863.1.1.0 beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) 0.59 43.0 3.72e-01 76.0% 72.4%
3807704 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 4.58e-01 100.0% 90.7%
3281675 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 51.0 4.94e-01 92.7% 87.6%
3461207 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.59 52.0 4.38e-01 97.9% 85.0%
3620624 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.58 53.0 4.11e-01 100.0% 58.6%
3675696 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.58 45.0 2.82e-01 100.0% 16.2%
2632043 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 51.0 4.58e-01 100.0% 90.0%
4288637 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.58 40.0 3.45e-01 72.9% 73.8%
4029737 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.58e-01 100.0% 10.8%
3289451 243.1.1.63 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.57 51.0 4.52e-01 100.0% 89.3%
3496336 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.28e-01 100.0% 25.2%
3177367 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.57 44.0 3.77e-01 82.3% 61.3%
3188192 3863.1.1.1 beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 0.57 41.0 3.62e-01 77.1% 72.4%
3355665 3863.1.1.1 beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 0.57 39.0 3.06e-01 89.6% 33.2%
4497770 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.57 50.0 3.25e-01 100.0% 27.5%
5018057 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 51.0 4.69e-01 100.0% 87.8%
3462995 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 45.0 3.75e-01 86.5% 72.9%
3560192 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.56 50.0 3.71e-01 100.0% 51.2%
3591507 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.45e-01 87.5% 97.3%
3213682 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 48.0 3.68e-01 100.0% 53.9%
3852197 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.54 48.0 3.60e-01 100.0% 53.4%
3270049 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.53 47.0 3.70e-01 96.9% 50.8%
4308071 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.53 45.0 3.86e-01 95.8% 77.5%
3653384 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 42.0 3.64e-01 87.5% 67.1%
3837825 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.95e-01 99.0% 81.2%
3879968 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.51 46.0 3.50e-01 100.0% 55.2%
4648616 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.51 44.0 3.72e-01 94.8% 77.5%
3929593 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.51 45.0 3.34e-01 100.0% 52.3%
3608988 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.51 43.0 4.33e-01 100.0% 94.7%
3853920 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.51 45.0 3.37e-01 100.0% 48.4%