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MW584202.1__QSM04724.1__PROPHIGD54-2_146__00124
Bact-VirMW584202.1__QSM04724.1__PROPHIGD54-2_146__00124
Identity
- Accession:
- MW584202 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Taxonomy
TaxID: 2813270
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-75
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 43.0 | 3.74e-01 | 76.4% | 42.6% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.63 | 46.0 | 3.75e-01 | 79.2% | 91.5% |
| 4pq0A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 40.0 | 3.74e-01 | 88.9% | 51.6% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.60 | 43.0 | 4.29e-01 | 79.2% | 71.4% |
| 2konA00 | 3.30.160.350 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 41.0 | 3.97e-01 | 70.8% | 68.3% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 44.0 | 3.81e-01 | 84.7% | 78.6% |
| 1okjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 50.0 | 4.23e-01 | 100.0% | 86.6% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 3.98e-01 | 72.2% | 74.3% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 39.0 | 3.99e-01 | 70.8% | 75.0% |
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.56 | 48.0 | 3.63e-01 | 100.0% | 56.6% |
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 44.0 | 4.19e-01 | 100.0% | 74.4% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 36.0 | 2.94e-01 | 73.6% | 33.3% |
| 3i6dA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.54 | 38.0 | 2.84e-01 | 73.6% | 84.4% |
| 1pj5A03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 46.0 | 3.46e-01 | 100.0% | 54.0% |
| 3k50A02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 40.0 | 3.71e-01 | 81.9% | 94.0% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.53 | 46.0 | 3.80e-01 | 100.0% | 97.8% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.53 | 45.0 | 3.76e-01 | 97.2% | 95.5% |
| 2pdoA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.26e-01 | 77.8% | 72.6% |
| 3e0yA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 37.0 | 2.97e-01 | 75.0% | 38.1% |
| 1tdjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.91e-01 | 88.9% | 80.4% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.84e-01 | 73.6% | 87.9% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 2.88e-01 | 76.4% | 35.6% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 41.0 | 2.72e-01 | 91.7% | 91.9% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 40.0 | 3.15e-01 | 90.3% | 81.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4440404 | 4325.1.1.15 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 | 0.73 | 51.0 | 4.25e-01 | 76.4% | 43.3% |
| 3370971 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.71 | 51.0 | 4.74e-01 | 76.4% | 66.7% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 45.0 | 4.50e-01 | 75.0% | 65.3% |
| 4106397 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 46.0 | 4.62e-01 | 76.4% | 72.0% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.64 | 44.0 | 4.99e-01 | 70.8% | 94.5% |
| 3511091 | 220.1.1.145 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP | 0.63 | 44.0 | 4.78e-01 | 73.6% | 88.3% |
| 3763863 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.63 | 45.0 | 4.33e-01 | 87.5% | 64.7% |
| 3871241 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.63 | 45.0 | 3.11e-01 | 81.9% | 21.2% |
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.63 | 41.0 | 4.58e-01 | 80.6% | 96.0% |
| 4438684 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 42.0 | 4.01e-01 | 72.2% | 83.3% |
| 3585171 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.61 | 42.0 | 3.98e-01 | 75.0% | 61.2% |
| 3456246 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.60 | 44.0 | 4.08e-01 | 76.4% | 73.3% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 44.0 | 4.29e-01 | 76.4% | 78.8% |
| 4953780 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.60 | 41.0 | 2.78e-01 | 73.6% | 33.8% |
| 3986842 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 30.0 | 3.06e-01 | 91.7% | 45.7% |
| 4276713 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 40.0 | 2.83e-01 | 76.4% | 20.4% |
| 3736612 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 44.0 | 4.17e-01 | 79.2% | 81.2% |
| 4056032 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 39.0 | 2.88e-01 | 75.0% | 22.7% |
| 3409973 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.58 | 41.0 | 4.08e-01 | 75.0% | 70.7% |
| 3259407 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 41.0 | 3.90e-01 | 73.6% | 65.9% |
| 3506561 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 42.0 | 4.13e-01 | 75.0% | 73.3% |
| 3906073 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 40.0 | 3.64e-01 | 80.6% | 52.4% |
| 3655368 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 40.0 | 3.98e-01 | 75.0% | 74.7% |
| 3271779 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 3.42e-01 | 81.9% | 41.4% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 40.0 | 3.98e-01 | 76.4% | 76.0% |
| 146717 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 40.0 | 3.61e-01 | 80.6% | 56.1% |
| 3447438 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 45.0 | 3.96e-01 | 100.0% | 61.8% |
| 3505249 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 41.0 | 3.81e-01 | 81.9% | 71.1% |
| 4026802 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.54 | 40.0 | 3.50e-01 | 83.3% | 51.7% |
| 4030981 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 3.58e-01 | 72.2% | 65.0% |
| 5072662 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 40.0 | 3.40e-01 | 86.1% | 81.5% |
| 2987309 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 36.0 | 3.64e-01 | 73.6% | 74.3% |
| 4234615 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.51 | 38.0 | 3.84e-01 | 81.9% | 93.3% |