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MW584202.1__QSM04731.1__PROPHIGD54-2_153__00131

Bact-Vir

MW584202.1__QSM04731.1__PROPHIGD54-2_153__00131

Identity

Accession:
MW584202 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Mycobacterium_phage_prophiGD54-2

TaxID: 2813270

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-43
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3npdA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.79 67.0 4.95e-01 100.0% 54.9%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.71 58.0 4.17e-01 100.0% 35.5%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.69 56.0 3.86e-01 100.0% 24.7%
4g6vA00 3.40.1350.120 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 58.0 4.16e-01 100.0% 33.3%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.69 51.0 3.45e-01 88.1% 30.4%
3u4qA06 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.69 54.0 3.54e-01 97.6% 27.3%
3hw5B00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.65 52.0 3.55e-01 100.0% 22.8%
3tw8A02 3.40.50.11500 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DENN domain, C-terminal lobe 0.63 46.0 3.17e-01 83.3% 35.4%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.63 51.0 4.16e-01 100.0% 47.6%
2cx0A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 53.0 4.33e-01 100.0% 63.9%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.62 49.0 3.29e-01 100.0% 25.6%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.62 51.0 3.44e-01 100.0% 46.8%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.61 51.0 4.28e-01 100.0% 67.9%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.61 45.0 4.28e-01 100.0% 67.3%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 48.0 3.30e-01 100.0% 77.5%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.60 44.0 4.47e-01 100.0% 86.0%
3nv7A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 46.0 3.29e-01 100.0% 39.4%
4xa8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 42.0 3.22e-01 88.1% 31.4%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.21e-01 100.0% 30.8%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 44.0 3.35e-01 100.0% 35.7%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.24e-01 100.0% 31.5%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 43.0 2.98e-01 100.0% 22.8%
1o14A02 2.20.150.10 Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase 0.56 48.0 4.49e-01 100.0% 90.6%
3bxoA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.05e-01 100.0% 42.9%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 40.0 3.08e-01 100.0% 31.0%
3bc8A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 40.0 2.75e-01 100.0% 37.4%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 42.0 3.09e-01 100.0% 48.6%
3a06B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 3.04e-01 100.0% 73.8%
2g5xA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 44.0 2.98e-01 100.0% 36.0%
2q07A01 3.40.50.10630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uracil-DNA glycosylase-like 0.51 38.0 2.91e-01 100.0% 68.3%
3g5oA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.51 37.0 3.80e-01 100.0% 100.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119502 3148.1.1.1 ↗ a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 › QSregVF 0.79 67.0 4.97e-01 100.0% 55.4%
3249642 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.78 66.0 3.87e-01 100.0% 13.7%
3555330 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.76 66.0 3.98e-01 100.0% 39.6%
3369565 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.75 64.0 3.99e-01 100.0% 31.0%
None — 0.74 64.0 3.79e-01 100.0% 30.8%
3457392 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.74 63.0 3.80e-01 100.0% 38.8%
4036845 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.72 62.0 3.75e-01 100.0% 23.5%
4958249 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.70 60.0 3.72e-01 100.0% 32.9%
3250443 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.69 57.0 3.66e-01 100.0% 79.6%
4954341 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.66 53.0 3.48e-01 100.0% 27.0%
4125079 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 57.0 4.99e-01 100.0% 75.4%
3386830 3105.1.1.0 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related 0.64 51.0 3.78e-01 100.0% 31.5%
3725765 2008.1.1.147 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 0.64 50.0 3.36e-01 100.0% 23.4%
3693544 2008.1.1.147 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 0.63 49.0 3.03e-01 100.0% 14.0%
4236698 219.1.1.20 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.63 50.0 3.17e-01 100.0% 17.2%
4927354 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.63 51.0 3.95e-01 100.0% 39.4%
4620724 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 50.0 3.82e-01 100.0% 55.8%
3502069 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 51.0 3.58e-01 100.0% 26.2%
4365754 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.62 51.0 3.35e-01 100.0% 27.9%
5078463 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.60 47.0 3.21e-01 100.0% 28.5%
3997892 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.60 45.0 3.46e-01 100.0% 32.0%
5051428 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 47.0 3.47e-01 100.0% 51.4%
5037620 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 43.0 3.19e-01 100.0% 31.4%
3211134 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 42.0 2.94e-01 100.0% 52.1%
4384575 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 42.0 3.11e-01 100.0% 56.0%
5017445 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 42.0 3.33e-01 100.0% 55.7%
3731979 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.54 39.0 2.64e-01 88.1% 23.3%
2629018 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.54 41.0 3.47e-01 100.0% 45.7%
3716396 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 41.0 2.88e-01 100.0% 22.1%
3678465 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 40.0 3.44e-01 100.0% 47.1%
4145207 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 40.0 2.93e-01 100.0% 25.6%
3723582 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.54 42.0 2.97e-01 100.0% 25.7%
3602662 4143.1.1.6 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc 0.53 45.0 3.37e-01 100.0% 61.8%
5039331 4143.1.1.6 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › Pus10_THUMP_arc 0.53 44.0 2.98e-01 97.6% 46.7%
4029680 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.53 43.0 2.97e-01 100.0% 24.0%
3681009 7573.1.1.4 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.53 39.0 2.58e-01 83.3% 84.8%
5027500 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 40.0 3.12e-01 100.0% 34.4%
134503 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.53 40.0 3.34e-01 100.0% 44.0%
3691629 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.52 39.0 2.84e-01 100.0% 29.1%
3477433 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.52 43.0 2.98e-01 100.0% 63.6%
3588688 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.51 41.0 3.80e-01 100.0% 73.3%
3954615 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 33.0 2.51e-01 88.1% 22.4%
3261527 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.51 40.0 2.94e-01 100.0% 50.3%