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MW584202.1__QSM04733.1__PROPHIGD54-2_155__00133

Bact-Vir

MW584202.1__QSM04733.1__PROPHIGD54-2_155__00133

Identity

Accession:
MW584202 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Mycobacterium_phage_prophiGD54-2

TaxID: 2813270

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-62
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w3wA02 6.10.140.1700 Special › Helix non-globular › Helix Hairpins › 0.73 41.0 5.05e-01 98.2% 100.0%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.65 53.0 3.65e-01 100.0% 48.7%
2c43A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.64 53.0 4.11e-01 98.2% 73.4%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.64 44.0 4.12e-01 100.0% 56.9%
3rpiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.38e-01 100.0% 56.1%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 47.0 3.48e-01 86.0% 99.4%
3fkuS02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.39e-01 100.0% 59.2%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.23e-01 100.0% 55.4%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.60 42.0 3.27e-01 100.0% 33.3%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.17e-01 100.0% 56.2%
2yr3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.40e-01 100.0% 41.4%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 49.0 4.08e-01 100.0% 81.3%
2biiA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 3.51e-01 100.0% 81.6%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.57 35.0 3.01e-01 100.0% 36.7%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 48.0 3.87e-01 100.0% 70.6%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.56 46.0 4.25e-01 100.0% 83.5%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 46.0 2.81e-01 96.5% 94.9%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.54 32.0 2.85e-01 89.5% 37.6%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 41.0 3.58e-01 89.5% 95.9%
2oo4A02 3.30.70.3310 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.61e-01 94.7% 83.8%
2bk8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.22e-01 100.0% 45.4%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.59e-01 100.0% 55.6%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 41.0 3.69e-01 89.5% 87.1%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.52 42.0 2.83e-01 93.0% 77.4%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.61e-01 89.5% 65.5%
1dj0A01 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.52 40.0 3.15e-01 89.5% 70.3%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 3.19e-01 98.2% 89.8%
2rikA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.14e-01 100.0% 46.3%
1wqsA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 34.0 3.23e-01 100.0% 57.1%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 2.88e-01 86.0% 61.0%
3e53A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 40.0 2.46e-01 93.0% 19.1%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.33e-01 100.0% 68.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980935 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.67 56.0 3.78e-01 100.0% 49.8%
4071981 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.66 57.0 5.27e-01 98.2% 84.0%
3478637 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.65 51.0 4.02e-01 100.0% 40.0%
3968312 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.65 56.0 4.62e-01 100.0% 92.6%
3492286 301.8.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N 0.64 53.0 4.49e-01 98.2% 100.0%
4487967 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.64 54.0 4.56e-01 98.2% 100.0%
3981776 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.63 53.0 4.45e-01 98.2% 95.2%
3515760 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.63 54.0 3.97e-01 100.0% 48.1%
3932815 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.63 54.0 3.96e-01 100.0% 48.1%
3784115 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.62 52.0 3.99e-01 98.2% 100.0%
4420610 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.60 50.0 4.37e-01 96.5% 84.3%
4957682 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.59 49.0 4.20e-01 100.0% 99.0%
3258033 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 43.0 4.07e-01 100.0% 68.6%
3606654 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.60e-01 87.7% 98.3%
3997010 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.56 46.0 4.21e-01 96.5% 93.8%
3927323 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.55 46.0 4.29e-01 96.5% 89.2%
3939986 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.55 46.0 4.03e-01 96.5% 83.3%
3237375 101.1.2.571 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3557 0.55 47.0 3.63e-01 100.0% 47.4%
3391202 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 45.0 4.21e-01 96.5% 74.3%
3217704 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.54 45.0 3.89e-01 96.5% 74.7%
5048277 304.102.1.2 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.54 47.0 3.16e-01 100.0% 36.1%
3244272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.74e-01 100.0% 58.3%
197838 304.147.1.1 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.54 32.0 2.85e-01 89.5% 37.6%
3923243 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.53 43.0 3.86e-01 96.5% 83.3%
2391719 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.53 37.0 3.23e-01 100.0% 46.2%
4988150 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 38.0 3.24e-01 87.7% 44.8%
3689743 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.52 40.0 2.98e-01 91.2% 92.8%
4939095 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.51 40.0 3.74e-01 89.5% 73.3%
3936465 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.51 40.0 3.11e-01 87.7% 57.8%
5056676 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 39.0 3.37e-01 89.5% 72.0%
3217790 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.51 41.0 3.90e-01 96.5% 94.3%