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MW584206.1__QSM04859.1__PROPHIGD91-4_7__00007

Bact-Vir

MW584206.1__QSM04859.1__PROPHIGD91-4_7__00007

Identity

Accession:
MW584206 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-156
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 37.0 5.73e-01 88.2% 100.0%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 38.0 5.46e-01 92.2% 93.2%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.81 57.0 5.94e-01 99.3% 77.5%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 58.0 6.11e-01 75.2% 82.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 53.0 6.34e-01 82.4% 100.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.76 50.0 5.96e-01 93.5% 98.1%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.75 70.0 5.64e-01 100.0% 73.5%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.75 69.0 6.07e-01 98.0% 71.5%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.74 58.0 4.53e-01 100.0% 40.6%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.74 55.0 5.39e-01 75.8% 80.1%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.74 55.0 4.25e-01 75.8% 83.2%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.74 48.0 5.76e-01 93.5% 98.0%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 54.0 4.77e-01 75.2% 70.7%
3mpxA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.74 46.0 4.17e-01 98.7% 46.6%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.74 52.0 5.53e-01 93.5% 82.7%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.73 37.0 5.10e-01 88.2% 100.0%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.73 63.0 4.84e-01 90.8% 84.3%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 67.0 6.28e-01 100.0% 88.3%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.73 53.0 4.74e-01 75.8% 62.9%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 66.0 5.57e-01 100.0% 68.0%
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 5.37e-01 94.1% 67.2%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 67.0 6.09e-01 100.0% 82.5%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.72 37.0 5.03e-01 92.8% 100.0%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.71 45.0 5.53e-01 85.6% 100.0%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 66.0 6.10e-01 100.0% 91.6%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 35.0 4.93e-01 77.8% 100.0%
3r6nB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 58.0 5.08e-01 94.1% 59.4%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 38.0 4.96e-01 93.5% 94.1%
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 63.0 5.47e-01 96.7% 66.7%
3i9wA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 59.0 4.85e-01 89.5% 79.3%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.70 39.0 4.12e-01 98.7% 60.3%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 45.0 5.07e-01 100.0% 84.6%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 63.0 5.24e-01 100.0% 80.5%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 63.0 5.26e-01 100.0% 83.6%
1qvrC04 6.10.140.130 Special › Helix non-globular › Helix Hairpins › 0.69 49.0 5.67e-01 84.3% 100.0%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.68 62.0 5.29e-01 100.0% 84.5%
4q4hA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.67 49.0 3.79e-01 90.8% 35.8%
4dylA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.67 61.0 5.17e-01 100.0% 79.6%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 61.0 5.47e-01 100.0% 81.3%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 54.0 4.91e-01 86.3% 86.8%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 60.0 5.02e-01 100.0% 82.4%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.66 32.0 3.32e-01 95.4% 47.7%
6h2dS01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.66 52.0 4.57e-01 83.0% 63.2%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 60.0 5.04e-01 100.0% 81.0%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 46.0 5.13e-01 100.0% 89.5%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 39.0 4.22e-01 94.8% 68.4%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 59.0 5.12e-01 100.0% 78.0%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.63 43.0 4.40e-01 100.0% 71.2%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 57.0 5.19e-01 100.0% 81.9%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 57.0 4.77e-01 100.0% 75.6%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.63 47.0 4.95e-01 100.0% 84.3%
4jkvB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 59.0 4.43e-01 100.0% 90.7%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.62 52.0 4.94e-01 95.4% 75.1%
7zdtD01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.62 49.0 3.85e-01 97.4% 39.0%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 56.0 5.10e-01 100.0% 87.6%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 4.63e-01 95.4% 76.1%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.60 49.0 4.84e-01 100.0% 81.4%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 52.0 4.82e-01 99.3% 83.3%
3edvA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.64e-01 94.8% 81.4%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.53 37.0 4.24e-01 97.4% 97.3%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289545 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.89 85.0 7.83e-01 100.0% 92.1%
3289539 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.88 84.0 7.49e-01 100.0% 82.0%
3290286 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.87 82.0 7.62e-01 100.0% 85.4%
3287147 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.85 81.0 7.76e-01 100.0% 91.2%
5010298 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.85 55.0 5.38e-01 98.0% 61.0%
3955729 150.8.1.7 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PF29644 0.82 77.0 7.54e-01 100.0% 97.0%
3218207 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.82 43.0 4.49e-01 97.4% 55.2%
3165834 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.80 59.0 4.80e-01 75.2% 98.1%
4144790 3755.3.1.592 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30340 0.80 63.0 4.54e-01 81.7% 76.7%
3953329 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.80 75.0 6.88e-01 100.0% 79.5%
3655688 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.79 56.0 5.32e-01 75.8% 62.3%
3397545 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.79 47.0 4.89e-01 99.3% 63.6%
3582569 3755.3.1.348 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › zf-C4H2 0.79 59.0 4.91e-01 75.8% 74.7%
3651361 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.79 75.0 6.40e-01 100.0% 86.1%
3283304 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.79 73.0 5.74e-01 99.3% 77.4%
3172328 4177.1.1.97 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PF30147 0.79 74.0 6.07e-01 100.0% 62.3%
4637398 3684.1.1.10 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF677 0.79 74.0 5.87e-01 100.0% 76.2%
3965698 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.79 59.0 3.81e-01 77.1% 29.0%
4310983 2004.1.1.567 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23 0.78 59.0 3.83e-01 77.1% 30.2%
5066104 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.78 54.0 3.60e-01 70.6% 63.3%
5010596 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 57.0 4.97e-01 75.2% 65.5%
4541467 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.78 69.0 6.53e-01 100.0% 80.6%
4125652 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 57.0 3.98e-01 74.5% 54.1%
3958913 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.78 72.0 6.80e-01 100.0% 83.9%
3443866 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 60.0 6.30e-01 100.0% 87.9%
3244996 5001.1.1.63 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.77 60.0 4.61e-01 100.0% 38.7%
4471073 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.77 57.0 4.17e-01 75.8% 52.4%
3719613 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.76 72.0 6.20e-01 100.0% 82.2%
3491731 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.76 45.0 4.81e-01 98.7% 66.7%
5062668 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.75 50.0 5.57e-01 71.9% 83.2%
3757027 150.1.1.119 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Clusterin 0.75 49.0 4.83e-01 100.0% 61.2%
3810801 632.22.1.139 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th 0.75 53.0 5.40e-01 76.5% 73.3%
4126623 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 53.0 3.44e-01 76.5% 18.8%
4028552 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 55.0 4.57e-01 75.2% 51.4%
3172350 4177.1.1.7 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.74 68.0 6.09e-01 98.0% 72.9%
3361164 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.74 52.0 4.71e-01 71.9% 100.0%
3915989 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.74 55.0 3.35e-01 75.2% 24.2%
3201572 4177.1.1.7 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.74 68.0 5.67e-01 98.0% 60.8%
3823212 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.74 42.0 4.38e-01 100.0% 60.0%
3275930 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.74 69.0 5.79e-01 100.0% 75.2%
3410475 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.74 69.0 6.46e-01 100.0% 85.4%
3273377 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 69.0 6.09e-01 100.0% 75.3%
3941435 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.74 55.0 5.56e-01 99.3% 77.3%
3168460 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.74 54.0 3.37e-01 75.2% 23.3%
4682191 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.74 68.0 5.75e-01 100.0% 87.1%
4206235 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.73 54.0 4.50e-01 75.8% 87.5%
3926392 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 40.0 4.30e-01 96.1% 60.7%
None 0.73 68.0 5.43e-01 100.0% 72.6%
3594185 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 51.0 4.55e-01 70.6% 67.3%
4276314 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 51.0 4.44e-01 71.2% 54.1%
3733561 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.72 67.0 5.69e-01 100.0% 88.2%
3364696 4006.1.1.0 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.72 56.0 5.64e-01 100.0% 80.0%
3167394 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.72 53.0 4.38e-01 75.8% 68.8%
3608199 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.72 66.0 6.19e-01 100.0% 84.3%
4002015 4177.1.1.3 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin 0.71 66.0 5.75e-01 100.0% 68.0%
3923558 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 50.0 4.70e-01 71.9% 64.9%
3176105 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.71 65.0 5.25e-01 100.0% 64.5%
3800491 4177.1.1.10 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH 0.71 66.0 5.51e-01 100.0% 82.4%
4410114 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 52.0 4.36e-01 76.5% 88.6%
3172862 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.70 65.0 5.35e-01 100.0% 70.2%
3739409 3285.1.1.0 alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain 0.70 64.0 5.89e-01 100.0% 78.5%
3207548 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 49.0 5.12e-01 71.2% 81.4%
4998237 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 49.0 4.54e-01 71.9% 74.9%
4178099 632.22.1.176 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF27734 0.69 49.0 4.93e-01 71.9% 93.5%
3990526 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.69 64.0 5.55e-01 100.0% 69.1%
3933812 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 60.0 5.37e-01 94.1% 87.0%
3737139 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.69 63.0 5.10e-01 100.0% 74.4%
3275757 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 52.0 3.45e-01 79.1% 68.9%
4601642 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.68 61.0 5.47e-01 95.4% 81.5%
3565626 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.67 40.0 4.01e-01 71.9% 57.4%
3838566 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.67 61.0 5.39e-01 99.3% 80.9%
3487977 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.66 61.0 5.49e-01 100.0% 80.5%
3925122 4177.1.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.66 60.0 5.33e-01 100.0% 71.4%
3888265 601.4.1.12 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › DNA_repr_REX1B 0.64 49.0 5.14e-01 99.3% 85.7%
3565534 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.64 57.0 4.93e-01 98.0% 80.8%
4015874 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.64 60.0 5.77e-01 100.0% 88.0%
3577772 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.63 56.0 4.55e-01 96.1% 80.7%
4015699 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 56.0 5.10e-01 97.4% 85.4%
4048446 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.63 57.0 4.98e-01 100.0% 84.8%
3191636 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.62 56.0 4.92e-01 99.3% 86.5%
4503293 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 54.0 4.02e-01 99.3% 44.4%
3205079 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.57 51.0 4.56e-01 99.3% 80.5%
D2 medium residues 193-340
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.80 38.0 4.06e-01 75.7% 52.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286961 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.82 44.0 4.46e-01 77.0% 54.5%
4477674 219.1.1.36 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.54 36.0 3.45e-01 75.7% 60.0%
D3 medium residues 341-433
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00877.26 best NLPC_P60 26.2 8.90e-06 90.3% 40.0%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.75 62.0 6.06e-01 87.1% 100.0%
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 68.0 6.06e-01 100.0% 83.3%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 65.0 5.85e-01 97.8% 84.3%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 65.0 5.32e-01 100.0% 72.0%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 64.0 5.40e-01 100.0% 74.3%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 63.0 5.67e-01 100.0% 75.6%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 62.0 5.40e-01 100.0% 76.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.66 59.0 4.50e-01 98.9% 46.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.65 51.0 5.21e-01 98.9% 86.8%
3kw0A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 55.0 4.28e-01 96.8% 52.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 36.0 4.23e-01 73.1% 87.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 52.0 4.70e-01 100.0% 84.0%
3hzbC00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.55 38.0 3.93e-01 89.2% 76.1%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 47.0 4.48e-01 97.8% 92.9%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 42.0 3.88e-01 82.8% 97.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 4.11e-01 100.0% 93.2%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 40.0 3.62e-01 80.6% 77.4%
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.53 35.0 3.94e-01 84.9% 87.7%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 41.0 3.30e-01 86.0% 80.5%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.53 36.0 3.21e-01 71.0% 89.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.61e-01 72.0% 85.4%
4b8eB00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 43.0 3.47e-01 93.5% 80.7%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.76e-01 84.9% 81.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 41.0 4.35e-01 84.9% 100.0%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.32e-01 75.3% 85.9%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 40.0 4.20e-01 84.9% 100.0%
3ufiA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.51 37.0 3.16e-01 76.3% 79.1%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 3.26e-01 79.6% 85.9%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3076246 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.90 63.0 5.79e-01 100.0% 58.3%
3286961 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.87 65.0 5.43e-01 100.0% 49.0%
3959495 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.87 62.0 6.76e-01 98.9% 88.5%
3257922 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.82 63.0 6.27e-01 97.8% 77.9%
3979648 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.82 67.0 5.68e-01 100.0% 55.6%
3960144 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.80 49.0 5.44e-01 92.5% 77.3%
4078132 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.72 68.0 6.01e-01 100.0% 82.0%
3268199 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.71 65.0 5.63e-01 98.9% 79.3%
2410168 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.70 66.0 5.78e-01 100.0% 79.5%
3517692 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.70 66.0 5.88e-01 100.0% 79.2%
161350 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.69 64.0 5.39e-01 100.0% 73.8%
182479 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.69 65.0 4.84e-01 100.0% 92.8%
1489617 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.67 63.0 5.56e-01 100.0% 71.5%
185736 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.66 60.0 4.44e-01 98.9% 97.0%
3278116 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.65 60.0 5.59e-01 98.9% 85.2%
5035935 219.1.1.26 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin 0.62 56.0 4.48e-01 100.0% 87.6%
3365658 3324.1.1.1 extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › MTR4_beta-barrel 0.62 47.0 3.49e-01 80.6% 47.8%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.60 35.0 4.03e-01 73.1% 78.6%
3935101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.44e-01 82.8% 100.0%
4030664 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.56 42.0 3.45e-01 78.5% 92.0%
4941299 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.56 38.0 3.97e-01 73.1% 75.3%
3938908 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.26e-01 81.7% 91.4%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 39.0 4.31e-01 80.6% 90.7%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 39.0 4.38e-01 79.6% 95.7%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 39.0 4.14e-01 73.1% 92.5%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.55 39.0 4.26e-01 80.6% 90.7%
5000523 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 4.32e-01 93.5% 86.7%
1548913 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.55 41.0 3.41e-01 79.6% 48.2%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 36.0 3.87e-01 82.8% 78.8%
4933389 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 33.0 3.45e-01 84.9% 64.7%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 35.0 4.07e-01 72.0% 100.0%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.54 38.0 4.15e-01 75.3% 92.0%
3926179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.27e-01 79.6% 100.0%
3435006 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.54 36.0 4.19e-01 80.6% 100.0%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 40.0 4.09e-01 79.6% 84.4%
3933539 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 4.11e-01 83.9% 100.0%
3928987 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.05e-01 82.8% 87.5%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 36.0 4.07e-01 83.9% 95.7%
3352481 1.1.2.35 beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.53 45.0 3.95e-01 96.8% 95.9%
3488129 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 42.0 3.64e-01 90.3% 83.9%
3601256 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 38.0 3.33e-01 88.2% 47.7%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 4.60e-01 100.0% 100.0%
3217211 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 40.0 4.04e-01 88.2% 85.3%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.51 35.0 3.91e-01 82.8% 91.9%
3651964 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.50 37.0 3.50e-01 80.6% 95.0%