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MW584207.1__QSM04944.1__PROPHIGD12-2_8__00008

Bact-Vir

MW584207.1__QSM04944.1__PROPHIGD12-2_8__00008

Identity

Accession:
MW584207 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_prophiGD12-2

TaxID: 2813240

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.69 59.0 5.44e-01 100.0% 94.2%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.68 60.0 4.99e-01 100.0% 65.6%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.68 57.0 4.60e-01 100.0% 61.5%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.68 49.0 4.77e-01 76.5% 87.3%
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.67 47.0 4.06e-01 74.5% 50.0%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.66 56.0 4.58e-01 98.0% 50.0%
2mf4A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.66 55.0 4.75e-01 94.1% 78.0%
1vzsA01 1.10.246.110 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 0.66 45.0 4.30e-01 74.5% 66.7%
3mfiA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.65 53.0 4.77e-01 98.0% 80.3%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.65 45.0 3.67e-01 74.5% 44.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.65 55.0 4.63e-01 100.0% 64.8%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.65 53.0 4.72e-01 100.0% 82.7%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.55e-01 88.2% 72.2%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.63 53.0 4.30e-01 100.0% 78.3%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 52.0 3.59e-01 94.1% 30.1%
4kp3C00 1.20.58.1770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 3.98e-01 80.4% 67.9%
4j7zF00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 53.0 4.39e-01 100.0% 60.6%
3s4lA00 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.60 48.0 3.38e-01 98.0% 35.5%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 3.89e-01 82.4% 57.6%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 40.0 3.67e-01 70.6% 50.0%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.59 44.0 4.26e-01 80.4% 93.0%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.59 49.0 4.42e-01 100.0% 86.7%
3eafA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 51.0 3.49e-01 98.0% 52.0%
1oizA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.58 40.0 3.63e-01 72.5% 73.6%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.58 45.0 3.84e-01 100.0% 85.6%
2wzkA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.57 46.0 3.66e-01 100.0% 52.8%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 39.0 3.58e-01 74.5% 61.4%
3e0zA00 1.20.58.1400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Domain of unknown function DUF3837 0.56 43.0 3.46e-01 84.3% 63.6%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.56 43.0 4.23e-01 90.2% 83.9%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.55 45.0 4.10e-01 94.1% 72.6%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 41.0 3.13e-01 80.4% 75.2%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 46.0 3.18e-01 96.1% 76.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 44.0 3.94e-01 94.1% 81.1%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.52 39.0 3.65e-01 96.1% 65.1%
5e7pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.10e-01 98.0% 63.6%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.35e-01 94.1% 73.7%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 38.0 3.06e-01 82.4% 90.4%
1aa7A02 1.10.10.180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 0.51 39.0 3.52e-01 96.1% 57.7%
3fotA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.51 44.0 2.86e-01 100.0% 21.9%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 41.0 3.04e-01 92.2% 87.9%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.51 42.0 2.99e-01 98.0% 46.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895342 101.1.2.475 ↗ alpha arrays › HTH › HTH › winged helix domain › FIBP 0.79 62.0 4.25e-01 100.0% 25.9%
3866299 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.72 62.0 5.91e-01 100.0% 85.0%
3394009 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.71 62.0 5.06e-01 100.0% 60.0%
3326759 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.71 63.0 5.52e-01 100.0% 77.3%
3450546 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 61.0 4.69e-01 100.0% 47.5%
3785340 7581.1.1.3 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.70 51.0 2.79e-01 78.4% 5.4%
3680460 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.68 59.0 5.13e-01 100.0% 71.2%
3248928 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.68 51.0 5.06e-01 82.4% 92.7%
3225554 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 47.0 3.85e-01 74.5% 93.7%
3367703 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.66 55.0 4.24e-01 100.0% 45.6%
3824062 185.1.1.3 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Hydrophob_seed 0.65 52.0 4.60e-01 94.1% 80.0%
3611276 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 53.0 4.45e-01 100.0% 83.0%
3484968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.64 47.0 3.09e-01 80.4% 17.8%
3255271 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.64 57.0 5.01e-01 100.0% 76.0%
4177685 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.64 49.0 4.41e-01 86.3% 85.3%
3806318 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 56.0 4.50e-01 100.0% 87.0%
3826926 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 55.0 4.25e-01 100.0% 56.7%
3227944 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 56.0 4.93e-01 100.0% 81.3%
3508753 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 55.0 4.55e-01 100.0% 71.6%
3195246 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 53.0 4.57e-01 98.0% 80.0%
3335438 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 54.0 4.46e-01 100.0% 89.5%
3562783 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 54.0 4.20e-01 100.0% 57.1%
3261684 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 54.0 4.70e-01 100.0% 88.7%
3518379 3502.1.1.1 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.62 42.0 4.16e-01 76.5% 67.3%
3237045 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 54.0 4.70e-01 100.0% 80.0%
3755038 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 54.0 4.26e-01 100.0% 58.2%
3096062 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 54.0 4.26e-01 100.0% 58.7%
3737576 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 53.0 4.29e-01 100.0% 62.9%
4027050 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 54.0 4.68e-01 100.0% 78.8%
3643664 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 50.0 4.57e-01 100.0% 76.0%
3739640 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 53.0 4.23e-01 100.0% 60.0%
4551346 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 53.0 3.95e-01 100.0% 45.0%
3497386 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.26e-01 100.0% 70.0%
3726260 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.61 53.0 4.01e-01 100.0% 49.2%
4993942 3009.1.1.14 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DUF2240 0.60 42.0 4.32e-01 76.5% 78.0%
4027643 4057.1.1.1 ↗ alpha arrays › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment › Topoisom_I_N 0.59 47.0 3.94e-01 90.2% 74.7%
4646832 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.22e-01 94.1% 93.8%
3992693 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 51.0 4.43e-01 100.0% 76.2%
3319356 650.1.1.5 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like 0.57 51.0 4.72e-01 100.0% 80.0%
3715528 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 46.0 3.82e-01 100.0% 68.6%
3627903 5.1.11.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_HPS5 0.56 40.0 2.37e-01 78.4% 15.6%
3913391 108.1.1.12 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha 0.54 44.0 4.20e-01 100.0% 93.8%
3216736 148.1.3.229 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7809 0.51 43.0 3.05e-01 100.0% 54.4%
D2 high residues 59-117
PDB
Domain cluster: rep: MK291441.1__AZV00160.1__pben1_p03__00002__D25-75
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12728.14 best HTH_17 39.6 7.30e-10 91.5% 96.1%