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MW584207.1__QSM05010.1__PROPHIGD12-2_80__00080

Bact-Vir

MW584207.1__QSM05010.1__PROPHIGD12-2_80__00080

Identity

Accession:
MW584207 ↗
Kingdom:
phage

Quality

60.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 228-399
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lmcA00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.80 59.0 5.74e-01 76.2% 100.0%
1gpuA03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 4.31e-01 80.2% 84.7%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 34.0 4.15e-01 81.4% 89.3%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 42.0 3.86e-01 75.0% 94.7%
2amlB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 42.0 3.96e-01 76.2% 77.0%
1v95A01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 35.0 4.15e-01 82.0% 90.5%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 32.0 4.12e-01 80.8% 96.9%
1j5xA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 40.0 4.25e-01 86.6% 84.0%
3g68B01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 42.0 3.99e-01 77.9% 79.6%
3knzA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 40.0 4.35e-01 83.7% 87.7%
3g68A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 41.0 4.48e-01 86.0% 91.7%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 40.0 4.39e-01 73.8% 96.4%
4o5aA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 38.0 4.28e-01 70.3% 100.0%
3lqkA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.55 38.0 3.74e-01 71.5% 99.5%
2cb0A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 41.0 4.33e-01 86.0% 87.5%
4s1wB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 44.0 4.27e-01 99.4% 76.6%
2a3nA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 41.0 4.24e-01 82.6% 84.6%
2amlA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 41.0 4.39e-01 86.6% 93.2%
3cs3A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 37.0 4.19e-01 70.9% 99.2%
1moqA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 44.0 4.05e-01 86.6% 79.4%
4s1wB02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 42.0 4.48e-01 99.4% 96.6%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 41.0 4.44e-01 86.0% 94.0%
3k9cB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 37.0 4.12e-01 70.3% 100.0%
2cb0A01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 40.0 4.18e-01 85.5% 85.4%
2z1dA01 3.40.50.11750 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 0.53 35.0 3.86e-01 70.3% 81.6%
5uqiA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 42.0 4.11e-01 85.5% 77.7%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 37.0 4.11e-01 73.3% 92.0%
3fj1A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 39.0 4.36e-01 86.0% 100.0%
1q1qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 3.18e-01 73.8% 63.7%
1qdlB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 39.0 3.82e-01 80.2% 99.5%
2fcrA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 39.0 3.97e-01 80.2% 99.4%
3fxaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 42.0 4.04e-01 86.0% 79.1%
1tllA01 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 39.0 3.95e-01 80.2% 98.9%
3eeqA01 3.40.50.11220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 34.0 4.02e-01 70.3% 98.3%
1j5xA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 38.0 4.01e-01 85.5% 85.4%
4ivnA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 40.0 3.97e-01 86.0% 77.7%
2odtX01 3.40.50.11370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 32.0 3.93e-01 79.1% 99.1%
1twyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 32.0 3.78e-01 72.1% 93.0%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 30.0 3.70e-01 74.4% 93.5%
3jv9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 30.0 3.69e-01 72.7% 93.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285500 2498.1.1.1 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 0.80 73.0 7.48e-01 97.7% 98.8%
4948101 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.79 61.0 5.89e-01 79.7% 97.9%
5053703 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.78 61.0 5.92e-01 80.8% 99.5%
5012330 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.78 61.0 5.45e-01 80.2% 99.1%
4959946 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.77 58.0 6.12e-01 76.7% 100.0%
3935764 2498.1.1.2 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.75 61.0 5.58e-01 84.3% 92.3%
5000662 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.73 55.0 5.70e-01 78.5% 100.0%
3939769 2498.1.1.2 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.71 58.0 5.59e-01 84.9% 99.5%
3504987 2498.1.1.2 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.71 60.0 4.60e-01 87.2% 55.1%
4004053 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.59 31.0 4.02e-01 81.4% 90.5%
5027975 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.59 31.0 4.11e-01 70.3% 92.6%
4129217 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 33.0 4.26e-01 81.4% 97.0%
3590625 2007.2.2.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.58 32.0 4.24e-01 80.2% 96.8%
3787018 7526.1.1.1 a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 0.58 34.0 3.82e-01 80.2% 74.1%
4049414 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 33.0 4.23e-01 80.8% 100.0%
10326 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 35.0 3.98e-01 82.0% 80.8%
4056946 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 34.0 4.16e-01 82.6% 93.6%
5055558 2498.2.1.0 mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.56 41.0 4.45e-01 81.4% 92.1%
4132866 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.55 47.0 3.65e-01 93.0% 80.5%
5078492 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.55 38.0 3.77e-01 77.9% 65.4%
5026167 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 29.0 3.66e-01 77.9% 87.4%
5025794 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.55 40.0 4.12e-01 80.8% 78.8%
5036374 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.54 40.0 3.98e-01 76.7% 80.5%
3608927 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.54 46.0 3.57e-01 92.4% 81.5%
3541739 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 33.0 3.52e-01 81.4% 67.1%
3405596 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 34.0 3.99e-01 82.0% 94.8%
1289554 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.53 41.0 4.08e-01 86.6% 76.5%
4017438 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.53 28.0 3.28e-01 81.4% 68.8%
4943212 2007.6.1.5 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C 0.53 41.0 4.04e-01 80.8% 78.9%
3956522 2003.1.9.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.53 41.0 3.92e-01 79.7% 93.3%
1116682 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.53 44.0 4.20e-01 89.5% 85.6%
3885059 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 34.0 3.63e-01 82.0% 74.0%
3784035 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 42.0 3.83e-01 84.9% 67.8%
3227183 2004.1.1.572 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HSNSD_N 0.52 42.0 3.85e-01 84.3% 100.0%
4025917 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 44.0 4.19e-01 99.4% 76.6%
3985555 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 42.0 4.00e-01 84.3% 73.5%
3944294 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 41.0 4.18e-01 86.0% 84.1%
4971780 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 41.0 4.25e-01 87.2% 87.3%
3288043 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.52 39.0 3.97e-01 80.2% 80.6%
3960446 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.52 38.0 4.13e-01 79.7% 90.9%
4034176 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 42.0 4.26e-01 86.6% 87.4%
5052674 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 41.0 3.94e-01 84.3% 77.5%
5044545 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 39.0 4.02e-01 84.9% 81.2%
4946884 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.51 40.0 3.90e-01 83.7% 77.9%
4418639 2003.1.1.120 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA 0.51 38.0 3.77e-01 78.5% 90.8%
1107956 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 38.0 4.01e-01 85.5% 85.4%
4121944 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 42.0 4.02e-01 88.4% 79.0%
3744633 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.50 33.0 3.86e-01 82.0% 97.4%
4667852 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.50 42.0 4.01e-01 95.3% 76.5%
10970 2007.23.1.1 a/b three-layered sandwiches › Flavodoxin-like › CbiG N-terminal domain-like › CbiG N-terminal domain-like › CbiG_N 0.50 34.0 3.99e-01 70.3% 98.3%
4670452 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.50 45.0 4.30e-01 99.4% 82.9%
5068839 2007.1.1.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › SNO 0.50 39.0 3.66e-01 80.2% 100.0%
4641374 2007.1.1.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.50 38.0 3.76e-01 80.2% 99.5%