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MW584207.1__QSM05016.1__PROPHIGD12-2_86__00086
Bact-VirMW584207.1__QSM05016.1__PROPHIGD12-2_86__00086
Identity
- Accession:
- MW584207 ↗
- Kingdom:
- phage
Quality
57.9
mean pLDDT
Taxonomy
TaxID: 2813240
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 441-597
Domain cluster:
rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00290__D56-216
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13930.13 best | Endonuclea_NS_2 | 98.8 | 4.20e-28 | 80.9% | 96.2% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3owvB00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.85 | 68.0 | 5.87e-01 | 81.5% | 68.3% |
| 4a1nA01 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.81 | 68.0 | 5.80e-01 | 87.3% | 76.2% |
| 2xgrA00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.79 | 63.0 | 5.78e-01 | 82.2% | 78.2% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.77 | 23.0 | 3.25e-01 | 73.2% | 51.2% |
| 1zm8A00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.76 | 73.0 | 6.16e-01 | 100.0% | 75.7% |
| 5inhA04 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.73 | 69.0 | 5.47e-01 | 100.0% | 74.7% |
| 4gtwB02 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.68 | 64.0 | 5.14e-01 | 100.0% | 74.2% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.65 | 22.0 | 3.12e-01 | 73.2% | 61.5% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.56 | 34.0 | 4.31e-01 | 89.8% | 99.0% |
| 1s0wC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.54 | 27.0 | 3.58e-01 | 79.6% | 85.7% |
| 4euyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 26.0 | 3.37e-01 | 84.7% | 83.7% |
| 2f3xA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.96e-01 | 100.0% | 84.6% |
| 2yyoA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.51 | 38.0 | 3.80e-01 | 98.7% | 75.6% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 34.0 | 3.46e-01 | 86.6% | 66.7% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 30.0 | 3.35e-01 | 76.4% | 75.2% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 34.0 | 3.69e-01 | 87.3% | 83.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030765 | 378.1.1.11 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 | 0.89 | 87.0 | 8.30e-01 | 100.0% | 91.4% |
| 3589217 | 378.1.1.11 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 | 0.87 | 69.0 | 6.37e-01 | 81.5% | 73.7% |
| 4575595 | 378.1.1.11 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 | 0.82 | 64.0 | 7.06e-01 | 98.7% | 99.2% |
| 3969210 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.79 | 71.0 | 5.66e-01 | 94.3% | 74.7% |
| 3622236 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 72.0 | 5.81e-01 | 100.0% | 77.5% |
| 8232 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.76 | 73.0 | 6.16e-01 | 100.0% | 75.4% |
| 3387043 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.74 | 69.0 | 6.34e-01 | 98.1% | 90.4% |
| 1807481 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.73 | 68.0 | 5.88e-01 | 96.8% | 83.4% |
| 3801721 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.73 | 24.0 | 3.15e-01 | 75.8% | 50.5% |
| 3889557 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.71 | 67.0 | 6.02e-01 | 99.4% | 90.9% |
| 3247311 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 65.0 | 5.36e-01 | 100.0% | 76.3% |
| 3575872 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 62.0 | 5.12e-01 | 100.0% | 72.3% |
| 3792478 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.62 | 58.0 | 5.05e-01 | 100.0% | 71.5% |
| 5039505 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.62 | 21.0 | 3.53e-01 | 79.6% | 87.3% |
| 2374 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.61 | 25.0 | 3.71e-01 | 77.7% | 86.8% |
| 1176008 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 33.0 | 3.19e-01 | 75.8% | 48.9% |
| 5642 | 809.1.1.2 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › BLIP | 0.54 | 26.0 | 3.46e-01 | 70.1% | 84.9% |
| 3894328 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.53 | 48.0 | 4.46e-01 | 98.1% | 79.5% |
| 1033272 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.51 | 39.0 | 4.10e-01 | 100.0% | 88.8% |
D2
medium
residues 1-161
Domain cluster:
rep: MW584209.1__QSM05032.1__PROPHIGD04-1_9__00009__D5-155