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MW584209.1__QSM05084.1__PROPHIGD04-1_63__00060
Bact-VirMW584209.1__QSM05084.1__PROPHIGD04-1_63__00060
Identity
- Accession:
- MW584209 ↗
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Taxonomy
TaxID: 2813230
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 157-227
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3msuB03 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.60 | 40.0 | 3.58e-01 | 70.4% | 64.5% |
| 2qk1A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 39.0 | 2.80e-01 | 74.6% | 51.5% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.53 | 41.0 | 4.27e-01 | 87.3% | 96.9% |
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 43.0 | 4.04e-01 | 100.0% | 77.7% |
| 5tkyA05 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 38.0 | 3.67e-01 | 85.9% | 69.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3480663 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.57 | 42.0 | 4.10e-01 | 80.3% | 86.3% |
| 3485333 | 601.42.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain › PLAC8 | 0.56 | 41.0 | 3.81e-01 | 80.3% | 74.7% |
| 3595261 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.54 | 39.0 | 3.69e-01 | 80.3% | 77.8% |
| 4930824 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.50 | 42.0 | 3.08e-01 | 97.2% | 54.4% |
D2
medium
residues 236-283
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uwpA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 49.0 | 3.23e-01 | 81.2% | 29.5% |
| 3do8A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.65 | 49.0 | 3.53e-01 | 81.2% | 88.1% |
| 3a1fA00 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.64 | 53.0 | 3.77e-01 | 97.9% | 58.3% |
| 1a9xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 49.0 | 3.79e-01 | 85.4% | 49.1% |
| 4p78A00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 42.0 | 3.53e-01 | 72.9% | 94.2% |
| 4xcvA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.27e-01 | 89.6% | 30.8% |
| 7y11A01 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.58 | 47.0 | 3.18e-01 | 93.8% | 34.5% |
| 1nvmB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 44.0 | 3.17e-01 | 87.5% | 51.9% |
| 1t1vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 41.0 | 3.37e-01 | 79.2% | 40.9% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.56 | 42.0 | 3.28e-01 | 87.5% | 49.6% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 43.0 | 3.24e-01 | 91.7% | 58.7% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.11e-01 | 91.7% | 52.0% |
| 2awnD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 3.04e-01 | 100.0% | 68.3% |
| 5t3dA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 39.0 | 2.87e-01 | 97.9% | 66.9% |
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.50 | 40.0 | 3.44e-01 | 95.8% | 58.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512158 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.74 | 48.0 | 3.37e-01 | 75.0% | 21.3% |
| 5046969 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.72 | 54.0 | 3.79e-01 | 81.2% | 85.3% |
| 4985498 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.72 | 50.0 | 4.04e-01 | 72.9% | 40.0% |
| 3496406 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 51.0 | 3.63e-01 | 75.0% | 63.7% |
| 4992747 | 2007.22.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD | 0.71 | 54.0 | 4.25e-01 | 83.3% | 81.0% |
| 3284171 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 54.0 | 3.78e-01 | 79.2% | 52.7% |
| 3601697 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 49.0 | 3.54e-01 | 75.0% | 53.2% |
| 5064022 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.68 | 50.0 | 3.47e-01 | 81.2% | 70.0% |
| 3880681 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.66 | 50.0 | 4.36e-01 | 83.3% | 68.0% |
| 3962618 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 48.0 | 3.66e-01 | 81.2% | 61.7% |
| 3520194 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.64 | 52.0 | 3.76e-01 | 89.6% | 55.0% |
| 3706111 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.62 | 45.0 | 3.18e-01 | 77.1% | 78.8% |
| 3789415 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.62 | 49.0 | 4.27e-01 | 91.7% | 72.5% |
| 3400755 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.61 | 43.0 | 3.43e-01 | 79.2% | 43.6% |
| 3409779 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.60 | 43.0 | 3.45e-01 | 79.2% | 45.7% |
| 4928403 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 52.0 | 3.69e-01 | 100.0% | 71.0% |
| 3958719 | 301.13.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C | 0.59 | 44.0 | 3.46e-01 | 83.3% | 89.1% |
| 3606062 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 3.65e-01 | 97.9% | 97.7% |
| 4929410 | 7601.1.1.0 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain | 0.58 | 45.0 | 3.09e-01 | 85.4% | 31.5% |
| 3719269 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 50.0 | 4.09e-01 | 100.0% | 71.1% |
| 11319 | 2485.1.1.18 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SH3BGR | 0.56 | 41.0 | 3.37e-01 | 79.2% | 40.9% |
| 5027514 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.55 | 45.0 | 3.25e-01 | 95.8% | 52.9% |
| 3304970 | 8002.1.1.1 ↗ | alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c | 0.55 | 41.0 | 3.25e-01 | 85.4% | 40.9% |
| 3707856 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.59e-01 | 97.9% | 66.4% |
| 3973508 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 44.0 | 3.49e-01 | 87.5% | 59.0% |
| 4539998 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.55 | 43.0 | 3.14e-01 | 91.7% | 92.4% |