←Back to structures
MW584211.1__QSM05105.1__PROPHIGD102-1_4__00004
Bact-VirMW584211.1__QSM05105.1__PROPHIGD102-1_4__00004
Identity
- Accession:
- MW584211 ↗
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Taxonomy
TaxID: 2813236
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-56
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.69 | 60.0 | 5.43e-01 | 100.0% | 71.8% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 51.0 | 3.78e-01 | 100.0% | 35.5% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 53.0 | 4.95e-01 | 98.1% | 75.7% |
| 1v5pA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 48.0 | 3.89e-01 | 98.1% | 42.7% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 53.0 | 4.49e-01 | 100.0% | 57.4% |
| 2eobA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 41.0 | 3.25e-01 | 100.0% | 31.9% |
| 1nrvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 43.0 | 3.50e-01 | 96.2% | 39.0% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 53.0 | 4.89e-01 | 100.0% | 74.6% |
| 3us4A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 42.0 | 3.45e-01 | 96.2% | 39.2% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.60 | 43.0 | 3.19e-01 | 79.2% | 62.9% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 51.0 | 4.71e-01 | 98.1% | 75.4% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 51.0 | 4.19e-01 | 100.0% | 58.4% |
| 7kggC02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.59 | 35.0 | 2.99e-01 | 100.0% | 33.7% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 48.0 | 4.04e-01 | 98.1% | 53.6% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 42.0 | 3.27e-01 | 100.0% | 32.4% |
| 8gjjC02 | 3.30.2090.10 | Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains | 0.56 | 36.0 | 3.00e-01 | 100.0% | 37.6% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 45.0 | 3.37e-01 | 100.0% | 36.6% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 45.0 | 3.95e-01 | 100.0% | 58.2% |
| 2k18A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.57e-01 | 100.0% | 77.2% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 41.0 | 3.81e-01 | 100.0% | 62.0% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 43.0 | 3.94e-01 | 94.3% | 85.5% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.74e-01 | 100.0% | 19.8% |
| 4hasA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 44.0 | 3.65e-01 | 100.0% | 73.1% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 42.0 | 3.41e-01 | 100.0% | 79.7% |
| 5z3gZ01 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.52 | 41.0 | 3.27e-01 | 100.0% | 40.3% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 39.0 | 3.14e-01 | 88.7% | 87.2% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 2.57e-01 | 100.0% | 52.8% |
| 4jdmA02 | 6.10.250.2680 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 30.0 | 2.85e-01 | 90.6% | 47.6% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 39.0 | 3.81e-01 | 100.0% | 76.5% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 42.0 | 3.48e-01 | 100.0% | 73.0% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 34.0 | 2.62e-01 | 71.7% | 29.0% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 41.0 | 3.37e-01 | 100.0% | 96.6% |
| 1orvA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 40.0 | 2.67e-01 | 92.5% | 95.7% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.51 | 40.0 | 3.15e-01 | 100.0% | 87.6% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 34.0 | 2.49e-01 | 71.7% | 23.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4889670 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.71 | 44.0 | 3.56e-01 | 100.0% | 33.3% |
| 119245 | 252.3.1.1 ↗ | a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA | 0.69 | 60.0 | 5.43e-01 | 100.0% | 71.8% |
| 3400775 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.67 | 36.0 | 2.70e-01 | 96.2% | 22.4% |
| 3987365 | 896.1.1.4 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 | 0.61 | 50.0 | 4.50e-01 | 100.0% | 65.0% |
| 4444614 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 52.0 | 4.62e-01 | 100.0% | 70.0% |
| 4009844 | 7503.1.1.18 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 | 0.60 | 50.0 | 3.84e-01 | 100.0% | 39.2% |
| 3270453 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.60 | 50.0 | 3.83e-01 | 100.0% | 46.4% |
| 5049605 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 47.0 | 4.72e-01 | 98.1% | 90.9% |
| 4363296 | 330.11.1.1 ↗ | a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG | 0.59 | 49.0 | 4.13e-01 | 100.0% | 56.0% |
| 3746947 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 49.0 | 3.97e-01 | 100.0% | 56.4% |
| 3968468 | 4152.2.1.0 ↗ | a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 | 0.58 | 50.0 | 4.49e-01 | 100.0% | 68.0% |
| 3322026 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.58 | 47.0 | 3.39e-01 | 100.0% | 31.6% |
| 3194028 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.57 | 45.0 | 3.79e-01 | 96.2% | 92.4% |
| 3772065 | 220.1.1.132 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C | 0.57 | 45.0 | 3.56e-01 | 100.0% | 40.9% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 46.0 | 4.49e-01 | 98.1% | 91.7% |
| 3520471 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.57 | 33.0 | 3.63e-01 | 98.1% | 76.3% |
| 3170963 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 41.0 | 3.24e-01 | 84.9% | 83.1% |
| 3613658 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.55 | 48.0 | 3.33e-01 | 100.0% | 30.5% |
| 3372861 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 48.0 | 3.75e-01 | 100.0% | 45.8% |
| 3170319 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 43.0 | 4.20e-01 | 96.2% | 80.0% |
| 3927132 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.55 | 43.0 | 3.57e-01 | 96.2% | 62.6% |
| 3315568 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 48.0 | 4.41e-01 | 100.0% | 78.6% |
| 3765831 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 43.0 | 3.53e-01 | 94.3% | 91.3% |
| 4142588 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.55 | 44.0 | 3.19e-01 | 100.0% | 29.7% |
| 3744353 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.55 | 39.0 | 3.87e-01 | 84.9% | 74.5% |
| 4259228 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.54 | 44.0 | 3.59e-01 | 100.0% | 46.4% |
| 3257603 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 46.0 | 3.59e-01 | 100.0% | 65.0% |
| 4880373 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.54 | 38.0 | 2.71e-01 | 77.4% | 42.7% |
| 4639619 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.53 | 43.0 | 3.32e-01 | 100.0% | 57.2% |
| 3541127 | 2.1.1.170 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 | 0.53 | 41.0 | 3.79e-01 | 100.0% | 64.0% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.53 | 35.0 | 3.41e-01 | 77.4% | 60.0% |
| 3744517 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 43.0 | 3.49e-01 | 100.0% | 69.2% |
| 5027780 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.53 | 45.0 | 4.34e-01 | 100.0% | 86.7% |
| 3621723 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.53 | 40.0 | 2.78e-01 | 96.2% | 22.4% |
| 3910253 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.52 | 45.0 | 3.66e-01 | 100.0% | 62.9% |
| 3974490 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 36.0 | 3.27e-01 | 75.5% | 51.2% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 39.0 | 3.75e-01 | 100.0% | 73.8% |
| 4003463 | 220.1.1.168 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 | 0.51 | 40.0 | 3.26e-01 | 96.2% | 44.0% |
| 3669519 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.51 | 40.0 | 3.51e-01 | 98.1% | 72.6% |
| 4087213 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 42.0 | 3.83e-01 | 100.0% | 89.3% |
| 3441822 | 5008.1.1.0 ↗ | extended segments › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) › Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) | 0.50 | 32.0 | 3.63e-01 | 73.6% | 91.4% |
D2
medium
residues 61-119