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MW584211.1__QSM05133.1__PROPHIGD102-1_34__00034

Bact-Vir

MW584211.1__QSM05133.1__PROPHIGD102-1_34__00034

Identity

Accession:
MW584211 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-111
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 57.0 3.90e-01 100.0% 24.3%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 53.0 4.00e-01 100.0% 33.0%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 52.0 3.40e-01 91.9% 27.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 54.0 4.15e-01 100.0% 90.1%
1kk1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 48.0 3.75e-01 100.0% 46.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.64 51.0 3.48e-01 100.0% 23.3%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 50.0 3.61e-01 100.0% 35.0%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 50.0 3.93e-01 100.0% 98.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.61 53.0 3.74e-01 100.0% 31.6%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 48.0 3.64e-01 100.0% 51.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.63e-01 100.0% 33.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 45.0 3.62e-01 100.0% 38.3%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 43.0 3.11e-01 100.0% 25.5%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.26e-01 100.0% 30.2%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 40.0 2.87e-01 86.5% 53.4%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.19e-01 100.0% 39.2%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 44.0 3.34e-01 100.0% 34.9%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.55 40.0 3.42e-01 100.0% 43.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.03e-01 100.0% 23.1%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.54 40.0 2.61e-01 100.0% 17.5%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 40.0 3.71e-01 100.0% 59.6%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.54 39.0 3.34e-01 100.0% 43.6%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 48.0 3.18e-01 100.0% 67.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.28e-01 100.0% 58.3%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 38.0 2.45e-01 86.5% 16.9%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 2.68e-01 86.5% 20.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.15e-01 100.0% 41.8%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 2.99e-01 100.0% 33.1%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 2.55e-01 97.3% 32.9%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 36.0 2.86e-01 100.0% 32.8%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.52 40.0 2.83e-01 100.0% 24.8%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 2.93e-01 100.0% 35.3%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.13e-01 100.0% 33.3%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 2.66e-01 100.0% 22.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 38.0 2.81e-01 100.0% 34.7%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 39.0 3.43e-01 100.0% 51.6%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.41e-01 75.7% 27.6%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.51 36.0 2.83e-01 94.6% 78.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 36.0 3.07e-01 100.0% 40.3%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 39.0 2.51e-01 100.0% 95.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 38.0 3.37e-01 100.0% 50.8%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 37.0 2.65e-01 81.1% 41.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.89 75.0 5.13e-01 100.0% 29.2%
5016315 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.87 73.0 4.99e-01 100.0% 28.0%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.75 62.0 5.73e-01 100.0% 86.0%
3601880 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.74 58.0 3.98e-01 100.0% 25.4%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 62.0 4.34e-01 100.0% 30.8%
5032539 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 55.0 4.78e-01 100.0% 63.1%
4998648 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.67 53.0 4.12e-01 100.0% 37.9%
3355968 375.1.1.190 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Fra10Ac1 0.66 49.0 3.60e-01 94.6% 27.8%
4929236 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.65 47.0 4.10e-01 100.0% 47.1%
5001224 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.64 51.0 3.33e-01 97.3% 32.8%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 3.56e-01 91.9% 88.0%
3517350 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.64 43.0 2.53e-01 70.3% 8.0%
3412592 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.63 51.0 3.10e-01 100.0% 12.3%
3741228 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.62 43.0 2.40e-01 70.3% 48.4%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.61 46.0 4.08e-01 97.3% 53.8%
1159602 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 48.0 3.63e-01 100.0% 50.9%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 46.0 4.20e-01 100.0% 58.3%
4999855 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 50.0 3.62e-01 100.0% 32.7%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 48.0 3.52e-01 100.0% 47.5%
4982570 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.60 47.0 3.87e-01 100.0% 47.1%
3253359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 2.80e-01 100.0% 93.5%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 44.0 2.82e-01 83.8% 28.4%
5050898 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.59 44.0 3.92e-01 100.0% 52.9%
3538024 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.59 46.0 2.83e-01 100.0% 12.0%
4340557 2002.1.1.81 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM 0.59 43.0 2.46e-01 100.0% 7.4%
4958220 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 48.0 3.38e-01 100.0% 27.7%
4319690 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.35e-01 100.0% 30.8%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.72e-01 100.0% 43.8%
4950639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 2.95e-01 100.0% 25.0%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.57 46.0 3.60e-01 94.6% 85.9%
5000523 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 48.0 3.44e-01 100.0% 57.5%
4511768 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 45.0 2.79e-01 100.0% 12.0%
3212189 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.57 43.0 3.28e-01 100.0% 34.8%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 45.0 2.71e-01 100.0% 11.6%
4353676 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.56 45.0 3.19e-01 100.0% 29.6%
4379531 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.56 45.0 2.93e-01 100.0% 20.5%
None 0.56 37.0 2.82e-01 75.7% 25.6%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 41.0 3.20e-01 100.0% 36.2%
4939382 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 45.0 3.40e-01 100.0% 33.6%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 48.0 3.72e-01 100.0% 51.2%
3811535 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.55 43.0 3.26e-01 100.0% 29.6%
3751411 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 41.0 3.38e-01 100.0% 38.9%
3559186 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.54 39.0 3.91e-01 100.0% 97.5%
4966827 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 43.0 3.11e-01 97.3% 30.0%
3221487 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 45.0 3.36e-01 100.0% 91.4%
3251381 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.53 41.0 3.62e-01 97.3% 63.1%
3391411 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 42.0 4.11e-01 100.0% 82.5%
3232370 5.1.3.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_ATRN-LZTR1 0.53 42.0 2.52e-01 100.0% 10.3%
3588750 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 37.0 3.13e-01 100.0% 40.0%
3258452 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 42.0 3.07e-01 97.3% 85.0%
5029019 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.52 43.0 2.67e-01 100.0% 37.8%
3956463 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.52 38.0 2.46e-01 100.0% 14.1%
3170704 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.30e-01 97.3% 15.1%
3174350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 3.53e-01 100.0% 53.8%
3651844 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.51 36.0 2.23e-01 89.2% 33.2%
3570836 3246.1.1.1 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR 0.51 40.0 2.90e-01 100.0% 27.4%
3458138 375.1.1.131 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 0.51 36.0 3.30e-01 100.0% 53.8%
3982478 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 2.80e-01 100.0% 27.4%
3645341 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.50 42.0 2.80e-01 100.0% 23.0%
D2 medium residues 3-62
PDB