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MW584211.1__QSM05139.1__PROPHIGD102-1_40__00040

Bact-Vir

MW584211.1__QSM05139.1__PROPHIGD102-1_40__00040

Identity

Accession:
MW584211 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-45
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.76 65.0 5.51e-01 100.0% 66.2%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.74 50.0 5.04e-01 73.8% 69.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.72 50.0 3.48e-01 73.8% 24.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.70 52.0 4.17e-01 85.7% 39.3%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.69 48.0 2.89e-01 73.8% 14.2%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.69 51.0 4.33e-01 78.6% 85.1%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.69 48.0 3.61e-01 76.2% 54.1%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 58.0 3.55e-01 100.0% 15.9%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 55.0 3.30e-01 92.9% 22.3%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.68 47.0 3.73e-01 73.8% 34.4%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.66 52.0 4.88e-01 95.2% 69.0%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 54.0 3.86e-01 95.2% 45.5%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 55.0 3.41e-01 100.0% 25.5%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.65 53.0 3.12e-01 100.0% 19.0%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.65 53.0 3.88e-01 95.2% 37.5%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.02e-01 95.2% 56.6%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.30e-01 100.0% 21.9%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.21e-01 100.0% 19.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.64 46.0 3.65e-01 78.6% 35.8%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 53.0 3.20e-01 100.0% 20.5%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 3.29e-01 73.8% 53.4%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 45.0 2.86e-01 76.2% 16.7%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 42.0 3.17e-01 73.8% 26.2%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.63 51.0 3.72e-01 100.0% 32.6%
7ojuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 53.0 3.48e-01 97.6% 81.7%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 52.0 3.33e-01 100.0% 74.7%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 47.0 3.46e-01 90.5% 35.3%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.60 50.0 3.17e-01 97.6% 32.6%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.60 47.0 3.54e-01 100.0% 35.6%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.59 48.0 3.32e-01 100.0% 46.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 48.0 3.44e-01 100.0% 56.2%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 2.77e-01 100.0% 26.4%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.56 43.0 3.00e-01 90.5% 35.2%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 40.0 2.71e-01 78.6% 25.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.80e-01 97.6% 69.9%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.18e-01 100.0% 32.4%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.08e-01 76.2% 74.4%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.39e-01 100.0% 67.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.54e-01 95.2% 56.1%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 44.0 3.63e-01 100.0% 72.3%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.14e-01 100.0% 51.2%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.52 39.0 3.64e-01 100.0% 62.1%
3x1lB02 3.30.1040.70 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.50 41.0 3.71e-01 100.0% 73.0%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930302 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.83 61.0 6.49e-01 78.6% 94.3%
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.76 67.0 6.34e-01 100.0% 84.0%
3661849 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 60.0 5.34e-01 100.0% 63.5%
4396885 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.73 61.0 4.34e-01 100.0% 45.2%
3682141 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.73 64.0 6.05e-01 97.6% 82.0%
3248068 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.72 61.0 4.92e-01 95.2% 55.0%
5011728 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.72 61.0 4.76e-01 100.0% 44.2%
4297945 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.71 61.0 5.66e-01 100.0% 76.4%
3888662 5.1.4.546 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CFAP43_N 0.70 60.0 3.50e-01 100.0% 22.0%
3615642 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.69 59.0 5.18e-01 100.0% 66.2%
3651436 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.69 58.0 3.74e-01 100.0% 25.7%
3831192 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.69 56.0 4.59e-01 100.0% 48.2%
3446681 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.69 54.0 5.11e-01 85.7% 72.0%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.68 58.0 4.12e-01 95.2% 37.6%
3299337 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.68 56.0 4.38e-01 100.0% 41.8%
3468885 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.67 55.0 4.66e-01 100.0% 52.5%
3419526 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.67 55.0 3.23e-01 92.9% 22.1%
3721757 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 56.0 4.86e-01 95.2% 100.0%
4083083 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 56.0 3.41e-01 100.0% 19.0%
3293480 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.67 57.0 4.95e-01 97.6% 63.1%
3314887 5.1.4.278 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, BING4CT 0.66 56.0 3.19e-01 100.0% 14.1%
3813458 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 58.0 5.53e-01 100.0% 84.0%
4995755 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 45.0 4.50e-01 76.2% 68.9%
3801480 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 3.77e-01 97.6% 42.6%
3994703 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 52.0 3.96e-01 100.0% 40.8%
3474310 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 55.0 4.16e-01 100.0% 62.7%
3741169 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 55.0 3.31e-01 97.6% 20.3%
3169399 4099.1.1.11 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 0.65 45.0 3.34e-01 73.8% 27.0%
4014976 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 56.0 3.21e-01 100.0% 17.2%
3384965 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 55.0 3.20e-01 100.0% 16.4%
3263883 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.65 55.0 3.14e-01 100.0% 14.3%
4979387 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.65 53.0 4.32e-01 100.0% 46.7%
3207612 206.1.3.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.65 49.0 3.21e-01 85.7% 23.7%
3425673 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.65 56.0 5.35e-01 100.0% 84.0%
3721305 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.65 44.0 3.39e-01 73.8% 55.3%
134040 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 46.0 3.65e-01 78.6% 35.8%
3231711 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.05e-01 95.2% 65.0%
4600425 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.64 52.0 3.67e-01 100.0% 27.7%
3411035 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 43.0 4.63e-01 73.8% 100.0%
3831169 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.63 54.0 3.30e-01 100.0% 16.7%
3742689 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.63 53.0 3.20e-01 100.0% 20.6%
4983870 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 52.0 4.17e-01 100.0% 46.3%
3979711 252.2.1.6 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.63 49.0 4.50e-01 100.0% 66.2%
3448941 2.1.1.31 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C 0.62 44.0 3.83e-01 81.0% 58.9%
3972934 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.61 51.0 3.95e-01 100.0% 41.0%
4126066 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.61 48.0 3.51e-01 100.0% 32.4%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.60 44.0 3.19e-01 83.3% 98.5%
3741856 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.60 50.0 3.55e-01 100.0% 29.6%
3702613 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 48.0 4.66e-01 100.0% 98.0%
5030390 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.60 42.0 3.45e-01 78.6% 40.4%
3671194 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.70e-01 100.0% 47.6%
3308290 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 44.0 2.94e-01 88.1% 19.2%
3282699 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 42.0 3.13e-01 81.0% 71.3%
3205068 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 40.0 3.43e-01 73.8% 91.4%
3821886 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 45.0 3.96e-01 100.0% 61.3%
3657857 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.56 39.0 2.43e-01 76.2% 11.9%
3845291 220.1.1.119 beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.56 44.0 2.87e-01 100.0% 18.3%
3697241 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 44.0 4.26e-01 100.0% 98.1%
4001931 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.24e-01 100.0% 29.6%
5030263 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.55 39.0 3.90e-01 81.0% 93.3%
2709124 7510.1.1.0 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.54 39.0 2.66e-01 83.3% 19.0%
3389668 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.54 41.0 3.44e-01 100.0% 44.0%
3645259 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.54 40.0 3.25e-01 97.6% 41.8%
3740379 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 40.0 3.81e-01 100.0% 75.0%
4113552 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.38e-01 100.0% 47.5%
3476015 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.53 39.0 3.29e-01 97.6% 47.4%
3990213 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.52 41.0 3.28e-01 95.2% 55.0%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.51 37.0 3.28e-01 95.2% 49.4%