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MW584212.1__QST90791.1__PROPHIGD13-2_34__00033
Bact-VirMW584212.1__QST90791.1__PROPHIGD13-2_34__00033
Identity
- Accession:
- MW584212 ↗
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Taxonomy
TaxID: 2813241
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-91_171-199
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 36.0 | 3.75e-01 | 100.0% | 67.6% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 41.0 | 4.15e-01 | 100.0% | 78.6% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.53 | 38.0 | 3.76e-01 | 73.1% | 100.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3376090 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 34.0 | 3.57e-01 | 100.0% | 58.7% |
| 4593147 | 3447.1.1.3 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › DUF1295 | 0.54 | 42.0 | 3.32e-01 | 100.0% | 40.4% |
| 3820263 | 7016.1.1.0 ↗ | extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain | 0.53 | 35.0 | 3.32e-01 | 100.0% | 54.5% |
| 4015166 | 142.1.1.34 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF2293 | 0.53 | 31.0 | 3.32e-01 | 72.3% | 67.0% |
| 3580644 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 36.0 | 3.44e-01 | 100.0% | 62.6% |
| 4957172 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.50 | 43.0 | 3.37e-01 | 98.3% | 78.6% |
D2
high
residues 95-163
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tw6C01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 49.0 | 3.05e-01 | 94.2% | 14.4% |
| 1dv2A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 49.0 | 3.30e-01 | 94.2% | 22.4% |
| 3va7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 47.0 | 3.30e-01 | 94.2% | 25.4% |
| 4a5wA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.00e-01 | 97.1% | 64.8% |
| 1jmxA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.62e-01 | 87.0% | 64.6% |
| 2y3aA02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 42.0 | 3.50e-01 | 92.8% | 99.3% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.70e-01 | 88.4% | 67.6% |
| 3t2lA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 42.0 | 3.47e-01 | 97.1% | 61.0% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 40.0 | 3.47e-01 | 89.9% | 68.1% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.47e-01 | 95.7% | 70.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025273 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.64 | 42.0 | 4.41e-01 | 85.5% | 76.7% |
| 3977819 | 304.147.1.0 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain | 0.62 | 40.0 | 4.23e-01 | 87.0% | 75.0% |
| 3786268 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 50.0 | 4.29e-01 | 98.6% | 54.2% |
| 4951002 | 325.1.1.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C | 0.61 | 49.0 | 4.03e-01 | 94.2% | 45.7% |
| 4946221 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.61 | 48.0 | 4.08e-01 | 94.2% | 49.2% |
| 3687294 | 325.1.1.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C | 0.61 | 49.0 | 3.88e-01 | 94.2% | 41.3% |
| 4013715 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.61 | 49.0 | 4.16e-01 | 94.2% | 52.0% |
| 3497320 | 325.1.1.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C | 0.60 | 49.0 | 4.15e-01 | 94.2% | 52.0% |
| 3969019 | 325.1.7.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H | 0.60 | 41.0 | 3.40e-01 | 73.9% | 59.3% |
| 3206197 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.59 | 45.0 | 4.31e-01 | 100.0% | 71.8% |
| 3528787 | 11.1.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M | 0.59 | 48.0 | 4.09e-01 | 100.0% | 54.2% |
| 3317633 | 325.1.1.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Biotin_carb_C | 0.58 | 47.0 | 3.93e-01 | 94.2% | 49.2% |
| 3173607 | 206.1.3.45 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Biotin_carb_C+CPSase_L_D2 | 0.58 | 46.0 | 3.03e-01 | 94.2% | 19.1% |
| 5039713 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.56 | 46.0 | 3.65e-01 | 98.6% | 54.5% |
| 3249602 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.97e-01 | 95.7% | 66.7% |
| 3022795 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.54 | 45.0 | 2.83e-01 | 100.0% | 41.7% |
| 4246520 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.54 | 43.0 | 3.01e-01 | 94.2% | 38.5% |
| 5007335 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 43.0 | 3.46e-01 | 98.6% | 49.7% |
| 3410544 | 11.1.1.901 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30053 | 0.51 | 41.0 | 3.55e-01 | 100.0% | 54.2% |
| 3584908 | 10.32.1.21 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW | 0.50 | 41.0 | 3.16e-01 | 98.6% | 44.7% |