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MW589261.1__QSJ04097.1__vBApySJF1_26__00026
Bact-VirMW589261.1__QSJ04097.1__vBApySJF1_26__00026
Identity
- Accession:
- MW589261 ↗
- Kingdom:
- phage
Quality
95.3
mean pLDDT
Taxonomy
TaxID: 2812861
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-71
Domain cluster:
rep: OQ623150.1__WGL30830.1__Southeast_051__00051__D4-54
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 64.0 | 6.00e-01 | 80.9% | 80.0% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 58.0 | 4.93e-01 | 75.0% | 56.7% |
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 61.0 | 4.01e-01 | 80.9% | 22.9% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 56.0 | 5.51e-01 | 72.1% | 71.8% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 60.0 | 5.05e-01 | 80.9% | 51.8% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.79 | 58.0 | 5.24e-01 | 76.5% | 74.2% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.79 | 57.0 | 5.70e-01 | 75.0% | 91.2% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 53.0 | 5.58e-01 | 70.6% | 80.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 59.0 | 5.11e-01 | 80.9% | 58.8% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.77 | 55.0 | 4.86e-01 | 76.5% | 52.6% |
| 3ug9A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.77 | 66.0 | 4.54e-01 | 94.1% | 72.4% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.76 | 58.0 | 5.08e-01 | 80.9% | 56.0% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.75 | 69.0 | 4.92e-01 | 100.0% | 56.3% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.74 | 65.0 | 5.27e-01 | 95.6% | 53.8% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 57.0 | 4.61e-01 | 100.0% | 47.1% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.73 | 65.0 | 4.97e-01 | 100.0% | 47.1% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.72 | 54.0 | 5.10e-01 | 79.4% | 67.9% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 64.0 | 4.64e-01 | 100.0% | 98.9% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 49.0 | 4.60e-01 | 75.0% | 60.5% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.69 | 54.0 | 3.28e-01 | 83.8% | 74.0% |
| 5ux2B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 46.0 | 3.20e-01 | 70.6% | 22.4% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 55.0 | 4.26e-01 | 89.7% | 94.7% |
| 4iw9A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 46.0 | 3.85e-01 | 70.6% | 46.0% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 48.0 | 3.59e-01 | 75.0% | 46.1% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.66 | 61.0 | 5.03e-01 | 98.5% | 81.2% |
| 2g5cB02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.64 | 44.0 | 3.71e-01 | 70.6% | 69.1% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.64 | 50.0 | 4.82e-01 | 82.4% | 73.7% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 46.0 | 3.78e-01 | 75.0% | 79.6% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 47.0 | 4.19e-01 | 79.4% | 56.1% |
| 1ykeD00 | 6.10.280.10 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator complex, subunit Med21 | 0.63 | 58.0 | 4.82e-01 | 100.0% | 96.5% |
| 3ihuA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.61 | 43.0 | 3.44e-01 | 75.0% | 86.3% |
| 3ktdD02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.60 | 42.0 | 3.60e-01 | 73.5% | 67.0% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.59 | 46.0 | 3.41e-01 | 82.4% | 60.7% |
| 2vf7B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 42.0 | 2.74e-01 | 76.5% | 37.2% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.58 | 50.0 | 3.53e-01 | 97.1% | 85.6% |
| 2vf8B02 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.58 | 41.0 | 3.22e-01 | 75.0% | 72.3% |
| 1qlbA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.55 | 46.0 | 3.89e-01 | 94.1% | 88.1% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.51 | 34.0 | 2.80e-01 | 76.5% | 37.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712975 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.94 | 70.0 | 4.49e-01 | 76.5% | 20.4% |
| 3954540 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.87 | 67.0 | 5.58e-01 | 80.9% | 56.4% |
| 4276314 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.86 | 67.0 | 4.51e-01 | 80.9% | 31.8% |
| 3241365 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.84 | 65.0 | 4.80e-01 | 80.9% | 48.1% |
| 3900531 | 3291.1.1.168 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF26143 | 0.83 | 62.0 | 5.18e-01 | 80.9% | 48.2% |
| 4652719 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.83 | 64.0 | 5.61e-01 | 80.9% | 68.4% |
| 3995128 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.82 | 74.0 | 5.04e-01 | 100.0% | 37.0% |
| 3785454 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.81 | 59.0 | 5.00e-01 | 76.5% | 50.5% |
| 4051951 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.80 | 61.0 | 5.54e-01 | 80.9% | 72.2% |
| 3760483 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 61.0 | 4.34e-01 | 80.9% | 29.5% |
| 3505389 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.80 | 61.0 | 3.75e-01 | 80.9% | 15.3% |
| 3221299 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.80 | 62.0 | 4.90e-01 | 83.8% | 48.1% |
| 5029796 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.77 | 59.0 | 4.83e-01 | 80.9% | 54.2% |
| 3483468 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.77 | 61.0 | 3.98e-01 | 83.8% | 21.5% |
| 3749112 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 54.0 | 3.52e-01 | 72.1% | 21.5% |
| 3339710 | 632.7.1.27 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Rx_N | 0.77 | 62.0 | 5.55e-01 | 88.2% | 100.0% |
| 4988993 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.77 | 62.0 | 4.72e-01 | 86.8% | 44.0% |
| 3940427 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.76 | 69.0 | 4.38e-01 | 100.0% | 40.0% |
| 3589400 | 192.5.1.4 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF1140 | 0.76 | 55.0 | 4.75e-01 | 75.0% | 59.0% |
| 3692753 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.75 | 62.0 | 4.60e-01 | 85.3% | 48.0% |
| 3286734 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.75 | 61.0 | 5.31e-01 | 86.8% | 82.0% |
| 3640760 | 3291.1.1.17 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF202 | 0.75 | 58.0 | 4.89e-01 | 82.4% | 57.3% |
| 3648687 | 604.12.1.89 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf | 0.75 | 52.0 | 4.57e-01 | 72.1% | 53.7% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.74 | 62.0 | 5.15e-01 | 88.2% | 60.0% |
| 3611632 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 58.0 | 5.06e-01 | 83.8% | 59.0% |
| 5064134 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.69 | 53.0 | 4.04e-01 | 80.9% | 68.0% |
| 3239087 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.67 | 56.0 | 4.72e-01 | 97.1% | 55.7% |
| 3634185 | 5059.1.1.23 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › DUF2418 | 0.66 | 46.0 | 3.71e-01 | 72.1% | 41.6% |
| 4018439 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.66 | 55.0 | 4.25e-01 | 94.1% | 79.4% |
| 3460130 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 42.0 | 4.06e-01 | 70.6% | 65.0% |
| 3213470 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 45.0 | 3.97e-01 | 76.5% | 56.0% |
| 5053143 | 3843.1.1.41 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PF29293 | 0.60 | 51.0 | 4.64e-01 | 94.1% | 96.7% |
| 3987595 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.59 | 41.0 | 4.21e-01 | 76.5% | 76.6% |
| 3993978 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.59 | 42.0 | 4.24e-01 | 76.5% | 80.0% |
| 3620955 | 6170.1.1.23 ↗ | alpha bundles › Kv7 proximal C-terminal Domain › Kv7 proximal C-terminal Domain › Kv7 proximal C-terminal Domain › PRA1 | 0.54 | 40.0 | 3.50e-01 | 82.4% | 59.1% |