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MW589261.1__QSJ04129.1__vBApySJF1_58__00058

Bact-Vir

MW589261.1__QSJ04129.1__vBApySJF1_58__00058

Identity

Accession:
MW589261 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_vB-SscS-F1

TaxID: 2812861

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-83
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 46.0 4.16e-01 78.5% 48.5%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 54.0 3.91e-01 81.0% 34.6%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.68 46.0 4.08e-01 100.0% 48.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 4.02e-01 70.9% 69.7%
4rl5A00 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.65 47.0 2.89e-01 75.9% 14.7%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 41.0 3.66e-01 74.7% 47.7%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.63 49.0 4.86e-01 87.3% 78.3%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.81e-01 73.4% 99.1%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 52.0 4.15e-01 100.0% 67.7%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 43.0 3.50e-01 79.7% 81.8%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.56 45.0 3.53e-01 87.3% 41.7%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 41.0 3.02e-01 81.0% 30.0%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 47.0 4.00e-01 100.0% 71.0%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 39.0 3.47e-01 78.5% 73.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4567738 192.29.1.50 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA 0.83 47.0 3.38e-01 79.7% 21.4%
3440194 601.3.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PTPLA 0.77 44.0 3.18e-01 81.0% 20.9%
4644045 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.74 48.0 4.36e-01 100.0% 49.5%
4513703 3236.2.1.8 ↗ alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Asp-Al_Ex 0.74 40.0 2.54e-01 83.5% 11.7%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 49.0 4.08e-01 72.2% 61.5%
5047150 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 53.0 3.86e-01 79.7% 89.5%
3410499 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.67 56.0 3.91e-01 91.1% 89.0%
3933404 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 48.0 3.83e-01 74.7% 61.3%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 48.0 3.99e-01 77.2% 69.3%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 49.0 4.12e-01 77.2% 87.2%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 48.0 4.16e-01 75.9% 73.0%
3803265 632.7.1.25 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.65 42.0 3.99e-01 82.3% 56.7%
3924780 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.65 54.0 3.74e-01 91.1% 87.7%
3176105 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.65 57.0 3.82e-01 96.2% 39.3%
4029803 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 46.0 3.84e-01 74.7% 78.5%
3665082 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.64 46.0 2.76e-01 75.9% 26.2%
4611933 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 45.0 3.70e-01 74.7% 45.3%
3726798 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.64 57.0 3.49e-01 100.0% 52.6%
3414130 109.4.1.1637 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, UTP6_C 0.63 41.0 2.43e-01 100.0% 8.7%
4940192 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 47.0 4.05e-01 77.2% 57.9%
4948599 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 47.0 4.51e-01 78.5% 75.6%
3250469 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 56.0 3.77e-01 98.7% 69.8%
5036014 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 46.0 4.32e-01 77.2% 69.5%
3580090 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.62 45.0 3.77e-01 81.0% 46.2%
3413217 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 46.0 4.02e-01 79.7% 77.4%
4262162 3882.1.1.1 ↗ alpha bundles › Atg17 › Atg17 › Atg17 › ATG17_like 0.60 52.0 3.25e-01 96.2% 71.6%
4242687 632.22.1.62 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › ATG17_like 0.60 51.0 3.33e-01 92.4% 63.4%
4991135 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 44.0 3.99e-01 77.2% 58.1%
3284214 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.60 54.0 4.34e-01 100.0% 58.7%
3172862 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.59 48.0 3.39e-01 89.9% 56.6%
3710532 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 45.0 4.06e-01 81.0% 78.1%
4535565 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.58 48.0 4.41e-01 89.9% 70.0%
3783375 1065.1.1.1 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.58 52.0 3.81e-01 100.0% 79.0%
5037841 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.58 45.0 4.03e-01 96.2% 59.1%
3259089 5001.1.1.87 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › EXS 0.57 51.0 3.51e-01 100.0% 28.4%
4658843 5039.1.1.1 ↗ alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 0.56 49.0 3.36e-01 100.0% 28.8%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.55 41.0 4.33e-01 98.7% 88.6%
4594578 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.54 47.0 4.41e-01 94.9% 83.2%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 46.0 3.93e-01 94.9% 70.4%
4662222 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 46.0 4.08e-01 98.7% 74.2%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 45.0 4.09e-01 94.9% 74.5%
5037317 3110.1.1.19 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3 0.53 46.0 2.81e-01 100.0% 16.8%
5053156 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 45.0 3.27e-01 100.0% 60.0%
3575264 604.12.1.61 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like 0.50 44.0 3.90e-01 100.0% 66.1%