←Back to structures

MW590223.1QSJ04798.1X__00033

Bact-Vir

MW590223.1__QSJ04798.1__X__00033

Identity

Accession:: MW590223 ↗
Kingdom:: phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cellulosimicrobium_phage_DS1

TaxID: 2812903

Cluster

View cluster (106 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 156-292_360-437

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00176.30 best	SNF2-rel_dom	96.4	2.40e-27	91.6%	60.1%
PF04851.22	ResIII	29.4	1.00e-06	65.1%	79.3%

D2 medium residues 293-359

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4wsfA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	35.0	2.96e-01	89.6%	43.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3734112	375.1.1.107 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Dynactin_p62	0.52	46.0	3.83e-01	100.0%	69.2%
3507936	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	46.0	3.44e-01	100.0%	48.6%

D3 medium residues 438-525_689-705

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hteA03	1.10.167.30	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 ›	0.64	35.0	4.00e-01	87.6%	70.0%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.50	44.0	4.07e-01	93.3%	81.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3806943	375.1.9.21 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › DUF3754	0.66	36.0	3.95e-01	70.5%	64.7%
3576225	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.66	32.0	2.58e-01	100.0%	24.6%
3668677	4133.1.1.1 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT	0.59	35.0	4.14e-01	84.8%	87.1%

D4 medium residues 526-579_645-661

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3we0A01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.66	57.0	3.80e-01	95.8%	45.2%
3dd9D02	6.10.140.2060	Special › Helix non-globular › Helix Hairpins ›	0.59	29.0	3.75e-01	100.0%	82.9%
2mzsA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.58	41.0	3.72e-01	76.1%	53.5%
3i09A02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.58	47.0	3.96e-01	94.4%	82.6%
1zbrA00	3.75.10.10	Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A	0.57	49.0	3.21e-01	98.6%	88.8%
1whrA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.56	50.0	4.16e-01	100.0%	74.2%
3hssA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.54	39.0	2.70e-01	78.9%	69.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4828712	4.8.1.30 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SNF2-rel_dom	0.71	51.0	5.19e-01	76.1%	80.0%
2738765	2004.1.1.542 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_7	0.68	46.0	4.68e-01	76.1%	71.4%
2738739	2004.1.1.156 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5	0.68	46.0	3.80e-01	76.1%	39.1%
3417562	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.63	57.0	3.88e-01	100.0%	42.9%
5050671	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.63	56.0	4.54e-01	100.0%	80.7%
5069377	2004.1.1.42 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE	0.60	50.0	3.07e-01	100.0%	35.7%
4229460	109.4.1.1384 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_long	0.59	40.0	2.71e-01	70.4%	23.0%
3933107	2484.1.1.9 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve	0.53	43.0	3.51e-01	90.1%	83.6%
4585449	160.1.1.1 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C	0.52	37.0	2.86e-01	74.6%	50.6%
3098011	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.51	37.0	3.36e-01	78.9%	97.0%