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MW598459.1__UGL59844.1__X__00028

Bact-Vir

MW598459.1__UGL59844.1__X__00028

Identity

Accession:
MW598459 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-205
PDB
D2 medium residues 214-302
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5bB03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.66 59.0 4.99e-01 100.0% 85.9%
3skvA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 45.0 3.49e-01 78.7% 94.0%
1b63A02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 53.0 4.96e-01 100.0% 95.6%
2gq0B01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 53.0 4.31e-01 100.0% 66.1%
3cwvA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 52.0 4.45e-01 100.0% 88.7%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 53.0 4.34e-01 100.0% 71.5%
4hxfB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 3.24e-01 87.6% 95.1%
4fhzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 3.29e-01 86.5% 99.1%
2pq8A01 3.30.60.60 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › N-acetyl transferase-like 0.54 29.0 3.38e-01 74.2% 78.2%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 48.0 3.56e-01 100.0% 71.4%
2q7sA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.54 41.0 3.03e-01 85.4% 98.5%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.16e-01 71.9% 58.5%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.88e-01 83.1% 98.6%
1y6zA01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 46.0 3.89e-01 100.0% 64.1%
1lfwA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 41.0 2.98e-01 85.4% 84.7%
1fj2A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 3.25e-01 91.0% 100.0%
2ppiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 36.0 3.40e-01 71.9% 75.0%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.19e-01 100.0% 93.9%
1e7uA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 27.0 2.25e-01 80.9% 26.3%
1nztA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.50 44.0 4.03e-01 97.8% 84.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957148 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.71 64.0 4.91e-01 100.0% 66.5%
5044842 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.68 61.0 4.58e-01 100.0% 62.3%
4956606 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.67 60.0 4.69e-01 100.0% 66.2%
4584919 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.66 59.0 4.59e-01 100.0% 67.0%
5033236 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.66 59.0 4.02e-01 100.0% 41.5%
4661396 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.66 59.0 4.43e-01 100.0% 56.9%
5044782 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.66 58.0 4.59e-01 100.0% 66.8%
3282393 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 59.0 5.00e-01 100.0% 73.1%
3968852 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.65 57.0 4.83e-01 98.9% 86.0%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.64 57.0 4.19e-01 100.0% 76.2%
4354451 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.64 57.0 5.11e-01 100.0% 97.6%
3292486 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.64 56.0 5.08e-01 100.0% 91.2%
4225685 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.64 57.0 5.10e-01 100.0% 96.0%
4655756 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.64 57.0 5.11e-01 100.0% 96.8%
4974215 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.63 55.0 4.81e-01 100.0% 85.7%
3869716 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.63 56.0 4.74e-01 100.0% 71.3%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.63 55.0 4.19e-01 100.0% 80.2%
3597401 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.63 56.0 4.75e-01 100.0% 86.7%
4940508 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.63 55.0 5.05e-01 100.0% 90.0%
3557551 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.63 55.0 4.91e-01 100.0% 83.1%
4289958 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.62 56.0 4.65e-01 100.0% 80.6%
3189015 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 54.0 4.91e-01 100.0% 99.2%
3470861 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 55.0 4.74e-01 100.0% 99.3%
3615913 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 54.0 4.84e-01 100.0% 90.8%
4026123 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.62 54.0 4.67e-01 100.0% 89.7%
4653108 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.61 53.0 4.98e-01 97.8% 92.7%
3830910 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.61 54.0 4.99e-01 100.0% 98.3%
3186561 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.61 53.0 4.72e-01 100.0% 94.8%
3260383 212.1.1.9 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.61 53.0 4.66e-01 100.0% 95.0%
4013409 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 53.0 4.70e-01 100.0% 96.3%
5062712 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.59 52.0 4.37e-01 100.0% 78.1%
3310887 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.59 52.0 4.70e-01 100.0% 86.4%
341211 212.1.1.2 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_gyraseB 0.59 52.0 4.41e-01 100.0% 88.1%
3216229 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.59 41.0 3.58e-01 73.0% 58.6%
3213536 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 40.0 3.56e-01 73.0% 65.2%
3744453 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.57 40.0 3.45e-01 71.9% 74.3%
3261485 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.56 41.0 3.12e-01 78.7% 94.2%
3247695 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.55 40.0 3.76e-01 77.5% 79.1%
3218522 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.55 39.0 3.50e-01 75.3% 90.0%
10185 2011.1.1.10 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › FGase 0.54 41.0 3.03e-01 85.4% 98.5%
5036488 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.53 41.0 3.14e-01 87.6% 79.2%
3957121 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.53 42.0 2.98e-01 87.6% 98.0%
3237637 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.52 36.0 3.56e-01 74.2% 79.0%
3685373 7579.1.1.92 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.51 40.0 2.69e-01 87.6% 92.7%
4558548 7579.1.1.18 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 0.51 40.0 3.12e-01 87.6% 99.5%
4149038 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.50 42.0 3.35e-01 93.3% 86.8%
D3 medium residues 303-359
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.66 49.0 3.82e-01 93.0% 35.6%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 49.0 4.17e-01 84.2% 89.9%
3keaA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.62 51.0 3.23e-01 91.2% 25.4%
2n1fA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 40.0 3.42e-01 71.9% 59.6%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.58 46.0 3.67e-01 93.0% 48.4%
3l24B02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 40.0 2.67e-01 80.7% 49.2%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.91e-01 93.0% 80.0%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 38.0 2.83e-01 78.9% 56.6%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.51 37.0 3.08e-01 80.7% 84.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023137 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 43.0 2.93e-01 75.4% 48.0%
3696289 109.4.1.2200 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N, MOR2-PAG1_C, MOR2-PAG1_mid 0.57 47.0 2.56e-01 98.2% 11.7%
5010925 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.56 45.0 3.29e-01 91.2% 86.1%
D4 medium residues 360-424
PDB
Domain cluster: representative
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4066106 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.55 43.0 4.03e-01 84.6% 87.5%
4443488 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.55 42.0 4.09e-01 84.6% 92.0%
4317197 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.54 42.0 3.90e-01 86.2% 95.2%
4239904 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.54 41.0 3.84e-01 84.6% 82.4%
3989956 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.53 42.0 3.90e-01 87.7% 96.5%
3386644 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.52 41.0 3.79e-01 86.2% 91.8%
4578190 2002.1.1.42 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.52 37.0 2.29e-01 80.0% 31.4%
4079831 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.51 40.0 3.70e-01 86.2% 92.9%