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MW627366.1__QTZ83276.1__phiGM223_10__00010
Bact-VirMW627366.1__QTZ83276.1__phiGM223_10__00010
Identity
- Accession:
- MW627366 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Tunggulvirus›
Pseudomonas_phage_phiGM22-3
TaxID: 2816462
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-68
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.69 | 62.0 | 4.87e-01 | 100.0% | 64.1% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.65 | 58.0 | 4.55e-01 | 100.0% | 63.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 45.0 | 4.44e-01 | 100.0% | 69.7% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.64 | 42.0 | 4.32e-01 | 100.0% | 71.2% |
| 8gk4C02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.62 | 52.0 | 4.67e-01 | 98.4% | 100.0% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 38.0 | 3.66e-01 | 100.0% | 50.6% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.60 | 39.0 | 3.07e-01 | 100.0% | 28.4% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 41.0 | 3.10e-01 | 71.4% | 78.3% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.34e-01 | 100.0% | 94.4% |
| 1ijyA00 | 1.10.2000.10 | Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain | 0.57 | 40.0 | 3.26e-01 | 74.6% | 59.0% |
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.19e-01 | 100.0% | 93.2% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 49.0 | 4.55e-01 | 100.0% | 92.6% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 48.0 | 4.46e-01 | 100.0% | 88.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 46.0 | 4.26e-01 | 100.0% | 92.9% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.54 | 46.0 | 4.31e-01 | 100.0% | 91.6% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 47.0 | 4.28e-01 | 100.0% | 91.9% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 46.0 | 4.23e-01 | 100.0% | 96.4% |
| 2hh2A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 46.0 | 4.29e-01 | 98.4% | 100.0% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 43.0 | 4.01e-01 | 100.0% | 92.9% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 43.0 | 4.00e-01 | 100.0% | 91.8% |
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 44.0 | 4.09e-01 | 100.0% | 100.0% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.51 | 44.0 | 3.93e-01 | 100.0% | 89.4% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 45.0 | 4.41e-01 | 100.0% | 90.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277841 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.65 | 47.0 | 4.68e-01 | 100.0% | 75.4% |
| 4501630 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 57.0 | 5.31e-01 | 98.4% | 91.3% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.64 | 51.0 | 5.41e-01 | 100.0% | 100.0% |
| 5062485 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.63 | 56.0 | 5.10e-01 | 98.4% | 87.1% |
| 3109885 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.63 | 54.0 | 4.58e-01 | 100.0% | 89.1% |
| 2879783 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 57.0 | 5.35e-01 | 100.0% | 97.3% |
| 3595127 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 56.0 | 5.47e-01 | 100.0% | 100.0% |
| 4352943 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 54.0 | 4.55e-01 | 100.0% | 89.1% |
| 3839311 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 53.0 | 4.51e-01 | 100.0% | 89.1% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 42.0 | 4.49e-01 | 100.0% | 92.0% |
| 4438218 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 52.0 | 4.39e-01 | 100.0% | 89.1% |
| 4210848 | 304.48.1.10 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS | 0.60 | 52.0 | 4.31e-01 | 100.0% | 80.0% |
| 4439773 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.60 | 52.0 | 4.77e-01 | 100.0% | 84.7% |
| 4413471 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 53.0 | 5.06e-01 | 100.0% | 93.3% |
| 4999156 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.59 | 50.0 | 4.23e-01 | 100.0% | 96.5% |
| 4193755 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 53.0 | 5.05e-01 | 100.0% | 94.7% |
| 4982133 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 52.0 | 4.82e-01 | 100.0% | 88.7% |
| 4045503 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.58 | 51.0 | 4.85e-01 | 100.0% | 94.7% |
| 4678670 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.58 | 52.0 | 4.81e-01 | 100.0% | 88.7% |
| 4399086 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.58 | 51.0 | 4.63e-01 | 100.0% | 84.7% |
| 4394754 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 50.0 | 4.49e-01 | 100.0% | 78.9% |
| 3694694 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.57 | 48.0 | 3.34e-01 | 100.0% | 97.9% |
| 4043605 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 50.0 | 4.56e-01 | 100.0% | 87.1% |
| 5079520 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.57 | 50.0 | 4.50e-01 | 100.0% | 75.6% |
| 4534213 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 50.0 | 4.55e-01 | 100.0% | 83.5% |
| 3587356 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 50.0 | 4.45e-01 | 100.0% | 81.1% |
| 3587109 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 49.0 | 4.43e-01 | 100.0% | 81.1% |
| 4373134 | 304.160.1.1 ↗ | a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF | 0.56 | 49.0 | 4.33e-01 | 100.0% | 88.4% |
| 4638999 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.56 | 49.0 | 4.56e-01 | 100.0% | 91.3% |
| 4223968 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.56 | 48.0 | 4.52e-01 | 100.0% | 88.7% |
| 4400436 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 47.0 | 4.14e-01 | 100.0% | 95.0% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 45.0 | 4.10e-01 | 100.0% | 91.6% |
| 4988481 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.55 | 44.0 | 2.79e-01 | 98.4% | 21.9% |
| 5012637 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 43.0 | 4.02e-01 | 92.1% | 71.2% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 44.0 | 4.08e-01 | 100.0% | 83.5% |
| 3812573 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 41.0 | 2.90e-01 | 90.5% | 58.7% |
| 4405647 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.52 | 44.0 | 3.19e-01 | 100.0% | 52.5% |
| 3949341 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 40.0 | 2.68e-01 | 87.3% | 55.3% |
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.51 | 36.0 | 3.14e-01 | 100.0% | 44.4% |