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MW650886.1__QVW27062.1__X__00021

Bact-Vir

MW650886.1__QVW27062.1__X__00021

Identity

Accession:
MW650886 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Escherichia_phage_vB_EcoM-ZQ1

TaxID: 2831176

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00015__D2-73
D2 high residues 135-232
PDB
D3 medium residues 238-335_362-396_440-489
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF18747.8 best HMUD2 121.0 8.80e-35 52.5% 29.5%
PF18747.8 HMUD2 32.4 8.20e-08 25.1% 11.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6wctD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 43.0 4.79e-01 87.4% 83.0%
1ivyB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 3.54e-01 77.6% 96.9%
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.56 47.0 4.14e-01 88.5% 90.2%
1q14A01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.51 39.0 3.97e-01 100.0% 80.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3377626 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.65 48.0 3.58e-01 77.0% 97.9%
3994527 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.63 46.0 3.51e-01 76.0% 96.6%
4461479 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.62 51.0 5.14e-01 86.9% 97.8%
3998642 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.60 44.0 3.55e-01 76.5% 98.1%
3226739 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.55 45.0 4.53e-01 87.4% 95.1%
5065307 2004.1.1.1215 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cdc6_lid 0.53 38.0 3.32e-01 72.7% 68.6%
4026721 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 30.0 3.84e-01 80.9% 99.0%
1537619 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.51 42.0 4.21e-01 86.9% 86.1%
D4 medium residues 336-361_397-439
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 41.0 3.22e-01 78.3% 91.7%
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.07e-01 81.2% 60.9%
1gkpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 41.0 2.70e-01 85.5% 32.4%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 38.0 3.16e-01 76.8% 63.9%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.52 36.0 3.64e-01 72.5% 88.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054005 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.06e-01 81.2% 90.0%
5029157 2486.1.1.5 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.57 47.0 3.25e-01 95.7% 57.4%
4995714 2004.1.1.1077 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27249 0.54 41.0 2.87e-01 82.6% 37.5%
4978789 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.62e-01 85.5% 89.5%
4021549 109.4.1.547 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clr5 0.51 42.0 2.73e-01 100.0% 65.8%