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MW671054.1__QTH79755.1__X__00014

Bact-Vir

MW671054.1__QTH79755.1__X__00014

Identity

Accession:
MW671054 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.70 42.0 3.70e-01 100.0% 41.1%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 50.0 4.13e-01 97.0% 48.0%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 52.0 3.37e-01 100.0% 21.4%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 36.0 4.12e-01 98.5% 97.4%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 53.0 3.38e-01 100.0% 40.5%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.60 51.0 4.56e-01 100.0% 87.9%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 50.0 4.07e-01 97.0% 49.3%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.59 41.0 3.50e-01 72.7% 45.4%
3eayA02 3.30.310.130 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related 0.59 52.0 4.24e-01 98.5% 64.2%
1g5bB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 53.0 3.65e-01 100.0% 88.7%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.59 47.0 3.53e-01 100.0% 34.5%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 49.0 3.89e-01 100.0% 43.5%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 3.33e-01 100.0% 34.0%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.58 49.0 3.72e-01 100.0% 37.9%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 48.0 3.89e-01 100.0% 46.3%
2igtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 36.0 3.70e-01 97.0% 64.6%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.57 44.0 3.50e-01 100.0% 39.0%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 45.0 3.70e-01 87.9% 100.0%
1gc5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 49.0 3.13e-01 100.0% 37.5%
2p6wA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 48.0 3.50e-01 100.0% 79.1%
1fvpA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 44.0 3.10e-01 90.9% 97.0%
3fveA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 45.0 3.54e-01 95.5% 42.2%
8fazD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 3.34e-01 100.0% 84.0%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 41.0 2.58e-01 84.8% 87.6%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.54 43.0 4.33e-01 98.5% 92.4%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 38.0 2.38e-01 78.8% 42.8%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 38.0 3.52e-01 81.8% 59.8%
1o50A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 42.0 3.30e-01 89.4% 49.6%
3b6hA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 43.0 2.68e-01 100.0% 73.8%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.51 47.0 3.27e-01 100.0% 90.6%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.51 42.0 3.48e-01 100.0% 65.0%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 36.0 3.42e-01 77.3% 62.0%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.65e-01 100.0% 87.0%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 38.0 3.00e-01 89.4% 36.2%
2d0oB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.51 44.0 3.79e-01 100.0% 70.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.50 35.0 3.04e-01 72.7% 46.7%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 34.0 3.07e-01 77.3% 47.9%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 3.67e-01 100.0% 61.3%
4iumA00 3.90.70.160 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 36.0 2.92e-01 89.4% 40.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995435 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.67 45.0 3.32e-01 100.0% 27.1%
4943309 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 45.0 3.79e-01 81.8% 41.2%
5041470 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.65 45.0 2.93e-01 100.0% 16.6%
4944138 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 41.0 3.57e-01 80.3% 41.9%
4174422 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 52.0 4.18e-01 97.0% 46.2%
3785513 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.63 56.0 3.71e-01 100.0% 34.1%
3426205 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.63 55.0 4.24e-01 100.0% 54.2%
4046575 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.61 49.0 4.13e-01 97.0% 51.3%
4369844 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.61 51.0 3.94e-01 100.0% 39.6%
3781932 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 52.0 3.30e-01 100.0% 19.8%
3242288 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.61 53.0 3.91e-01 100.0% 42.8%
4938576 2003.6.1.4 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.61 53.0 3.27e-01 100.0% 28.5%
4097693 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.60 53.0 4.09e-01 100.0% 45.3%
3340171 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 4.48e-01 86.4% 100.0%
5050684 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.79e-01 80.3% 58.2%
190 1.1.9.12 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PrgU 0.60 51.0 4.56e-01 100.0% 87.9%
3728722 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 53.0 3.61e-01 100.0% 29.6%
4042520 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.60 49.0 3.46e-01 100.0% 27.6%
3387257 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.59 49.0 3.36e-01 100.0% 25.4%
5004276 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.59 48.0 3.32e-01 100.0% 24.4%
4944802 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.59 48.0 3.27e-01 100.0% 23.0%
4331745 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.59 49.0 3.87e-01 97.0% 42.8%
5023848 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.59 48.0 3.91e-01 100.0% 46.9%
7863 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 53.0 3.67e-01 100.0% 89.5%
4938029 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.59 45.0 3.94e-01 81.8% 66.3%
4937915 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.59 44.0 3.91e-01 81.8% 65.7%
4940513 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.59 39.0 3.63e-01 89.4% 51.1%
4566218 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.59 48.0 3.98e-01 98.5% 48.8%
4935477 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.59 48.0 3.34e-01 100.0% 26.5%
5057744 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 39.0 2.91e-01 100.0% 27.1%
4464646 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 49.0 3.56e-01 100.0% 33.2%
4314980 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.58 49.0 3.85e-01 100.0% 42.7%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.90e-01 80.3% 61.1%
5032910 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.58 45.0 3.82e-01 95.5% 49.2%
5082574 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.57 47.0 3.57e-01 95.5% 37.5%
3786356 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 51.0 4.30e-01 100.0% 72.7%
4575341 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 48.0 3.77e-01 100.0% 42.2%
5064558 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 47.0 2.98e-01 100.0% 17.0%
3928377 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 47.0 3.53e-01 100.0% 37.0%
182717 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.56 47.0 3.15e-01 100.0% 22.6%
4997112 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.31e-01 80.3% 46.9%
3929482 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.54 42.0 3.27e-01 86.4% 53.1%
4051669 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 49.0 4.33e-01 100.0% 74.7%
3288745 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 45.0 3.21e-01 93.9% 34.1%
3928322 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 38.0 3.31e-01 100.0% 47.6%
4999354 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 37.0 2.89e-01 86.4% 30.6%
3531324 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.53 46.0 2.57e-01 100.0% 7.7%
5040424 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 46.0 3.32e-01 98.5% 37.4%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 36.0 2.80e-01 100.0% 35.4%
4935902 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 41.0 2.81e-01 86.4% 30.2%
4236550 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.52 40.0 2.47e-01 86.4% 14.7%
4944566 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.22e-01 80.3% 74.8%
3008212 209.1.1.8 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › TcpF 0.51 43.0 3.26e-01 98.5% 58.2%
3982644 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 43.0 2.81e-01 100.0% 20.0%
3618122 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.51 36.0 2.71e-01 84.8% 26.7%
4197235 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 41.0 3.78e-01 97.0% 97.9%