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MW677517.1__QXN71664.1__RCKEMMY_65__00065
Bact-VirMW677517.1__QXN71664.1__RCKEMMY_65__00065
Identity
- Accession:
- MW677517 ↗
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-87
Domain cluster:
rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13730.13 best | HTH_36 | 53.4 | 2.50e-14 | 64.7% | 98.2% |
D2
high
residues 172-247
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lzjA02 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 42.0 | 4.18e-01 | 73.7% | 58.2% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 40.0 | 4.22e-01 | 75.0% | 69.7% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 48.0 | 5.12e-01 | 100.0% | 95.3% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 40.0 | 4.63e-01 | 94.7% | 100.0% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 38.0 | 3.90e-01 | 75.0% | 63.0% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 37.0 | 4.03e-01 | 100.0% | 75.0% |
| 2x8aA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 49.0 | 4.92e-01 | 98.7% | 88.7% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.60 | 51.0 | 3.94e-01 | 100.0% | 66.7% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.60 | 43.0 | 4.32e-01 | 77.6% | 83.3% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 38.0 | 4.06e-01 | 98.7% | 74.6% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.58 | 43.0 | 4.36e-01 | 100.0% | 83.1% |
| 1ichA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 41.0 | 4.02e-01 | 77.6% | 86.2% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 32.0 | 3.11e-01 | 97.4% | 49.4% |
| 2cdqA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.55 | 39.0 | 3.65e-01 | 76.3% | 82.5% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.54 | 41.0 | 4.11e-01 | 92.1% | 80.5% |
| 1rdfA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 32.0 | 3.27e-01 | 96.1% | 57.7% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 37.0 | 3.67e-01 | 75.0% | 85.2% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 42.0 | 3.44e-01 | 89.5% | 89.9% |
| 4fx0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.18e-01 | 73.7% | 49.2% |
| 1h6gA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 37.0 | 3.21e-01 | 75.0% | 89.1% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 38.0 | 3.62e-01 | 80.3% | 83.1% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.50 | 36.0 | 3.52e-01 | 75.0% | 69.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254417 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 57.0 | 5.73e-01 | 100.0% | 82.7% |
| 4015710 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 59.0 | 5.77e-01 | 100.0% | 82.4% |
| 3887909 | 148.1.3.5 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N | 0.71 | 56.0 | 5.72e-01 | 100.0% | 88.0% |
| 3226552 | 148.1.3.5 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N | 0.69 | 55.0 | 5.74e-01 | 100.0% | 97.1% |
| 3832681 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 53.0 | 4.93e-01 | 98.7% | 69.5% |
| 3590984 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 52.0 | 5.18e-01 | 94.7% | 85.0% |
| 3059959 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 46.0 | 4.59e-01 | 98.7% | 77.5% |
| 4562844 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 39.0 | 4.30e-01 | 81.6% | 90.9% |
| 3366898 | 108.1.1.1 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 | 0.60 | 46.0 | 3.89e-01 | 82.9% | 71.5% |
| 3407099 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.60 | 41.0 | 4.34e-01 | 94.7% | 84.6% |
| 3741345 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.59 | 42.0 | 4.23e-01 | 78.9% | 73.8% |
| 3586489 | 2004.1.1.33 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind | 0.58 | 45.0 | 2.93e-01 | 85.5% | 18.6% |
| 4009282 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 47.0 | 4.76e-01 | 100.0% | 93.3% |
| 3736407 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.58 | 43.0 | 4.40e-01 | 81.6% | 85.3% |
| 4963759 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 45.0 | 4.57e-01 | 100.0% | 90.7% |
| 4937736 | 103.7.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind | 0.58 | 43.0 | 4.00e-01 | 98.7% | 63.0% |
| 3996790 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.57 | 40.0 | 4.09e-01 | 76.3% | 76.0% |
| 3479512 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 40.0 | 3.91e-01 | 98.7% | 67.1% |
| 3990819 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.55 | 47.0 | 4.21e-01 | 94.7% | 80.9% |
| 5073312 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 47.0 | 3.38e-01 | 97.4% | 97.0% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 3.17e-01 | 93.4% | 90.2% |
| 169843 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.52 | 37.0 | 3.47e-01 | 76.3% | 78.8% |
| 3437958 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 43.0 | 3.13e-01 | 100.0% | 34.3% |
| 5083350 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 34.0 | 3.02e-01 | 71.1% | 71.4% |
D3
high
residues 263-306
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 45.0 | 3.37e-01 | 79.5% | 27.4% |
| 2honA02 | 1.20.1250.30 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 41.0 | 2.95e-01 | 88.6% | 22.6% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.39e-01 | 88.6% | 100.0% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 47.0 | 3.68e-01 | 100.0% | 89.4% |
| 4fqgA02 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 44.0 | 4.01e-01 | 90.9% | 95.1% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 42.0 | 3.97e-01 | 97.7% | 93.4% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.53 | 44.0 | 3.30e-01 | 100.0% | 68.2% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.52 | 36.0 | 3.35e-01 | 75.0% | 66.7% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.04e-01 | 100.0% | 79.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3359417 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 54.0 | 3.31e-01 | 100.0% | 17.3% |
| 3537310 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.59 | 48.0 | 4.24e-01 | 90.9% | 81.5% |
| 1068636 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.59 | 46.0 | 4.39e-01 | 88.6% | 100.0% |
| 3274887 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.58 | 46.0 | 4.22e-01 | 90.9% | 93.3% |
| 4028136 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.58 | 45.0 | 4.07e-01 | 90.9% | 86.2% |
| 3169408 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.57 | 45.0 | 3.97e-01 | 90.9% | 82.9% |
| 4973230 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.56 | 42.0 | 2.73e-01 | 81.8% | 75.5% |
| 3479976 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.56 | 44.0 | 4.07e-01 | 90.9% | 93.3% |
| 3515291 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.56 | 43.0 | 3.83e-01 | 90.9% | 82.9% |
| 3903163 | 101.1.17.16 ↗ | alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th | 0.55 | 43.0 | 4.02e-01 | 90.9% | 93.3% |
| 3405078 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.54 | 39.0 | 2.28e-01 | 79.5% | 31.3% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.54 | 41.0 | 3.68e-01 | 90.9% | 81.4% |
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.52 | 39.0 | 2.96e-01 | 100.0% | 71.0% |
| 4283426 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.51 | 41.0 | 2.91e-01 | 100.0% | 73.9% |