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MW677525.1__QXN72398.1__RCSIMONEHASTD_69__00069
Bact-VirMW677525.1__QXN72398.1__RCSIMONEHASTD_69__00069
Identity
- Accession:
- MW677525 ↗
- Kingdom:
- phage
Quality
80.5
mean pLDDT
Taxonomy
TaxID: 2835981
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 447-498
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.80 | 55.0 | 4.16e-01 | 71.2% | 87.6% |
| 1wekF01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 45.0 | 3.03e-01 | 75.0% | 37.5% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.63 | 49.0 | 4.71e-01 | 92.3% | 73.0% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 39.0 | 2.78e-01 | 75.0% | 20.3% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 3.02e-01 | 94.2% | 71.7% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 41.0 | 2.81e-01 | 86.5% | 40.4% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.51 | 37.0 | 3.26e-01 | 82.7% | 67.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989349 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.74 | 53.0 | 5.05e-01 | 75.0% | 76.7% |
| 5077975 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 49.0 | 3.89e-01 | 71.2% | 50.5% |
| 3170757 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.68 | 56.0 | 4.65e-01 | 90.4% | 80.0% |
| 3596839 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 55.0 | 5.40e-01 | 92.3% | 98.2% |
| 3737108 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.64 | 53.0 | 4.93e-01 | 90.4% | 76.9% |
| 3246402 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.62 | 53.0 | 4.89e-01 | 92.3% | 75.4% |
D2
medium
residues 159-290
Domain cluster:
rep: MW512570.1__QVW56605.1__X__00003__D116-221
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 25.0 | 3.45e-01 | 78.0% | 90.6% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 37.0 | 3.56e-01 | 76.5% | 63.5% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 31.0 | 3.45e-01 | 100.0% | 72.5% |
| 4o4oA00 | 2.40.128.590 | Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain | 0.52 | 44.0 | 3.85e-01 | 91.7% | 76.6% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 42.0 | 4.01e-01 | 87.9% | 94.2% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 35.0 | 3.39e-01 | 75.8% | 60.5% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 40.0 | 4.08e-01 | 86.4% | 84.5% |
| 5mc9A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 3.23e-01 | 72.0% | 83.0% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 3.30e-01 | 74.2% | 86.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942943 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.84 | 80.0 | 6.23e-01 | 100.0% | 52.9% |
| 4034609 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.72 | 56.0 | 6.10e-01 | 99.2% | 97.3% |
| None | — | 0.56 | 43.0 | 3.15e-01 | 79.5% | 93.1% | |
| 3698253 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.55 | 39.0 | 2.64e-01 | 72.0% | 83.4% |
| 3719333 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 43.0 | 3.00e-01 | 81.8% | 83.4% |
| 3980621 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.54 | 44.0 | 3.77e-01 | 87.1% | 86.0% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.54 | 34.0 | 3.92e-01 | 78.0% | 85.0% |
| 3279607 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.54 | 38.0 | 4.30e-01 | 87.1% | 96.0% |
| 3274206 | 5.1.4.433 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS3_N | 0.53 | 37.0 | 2.81e-01 | 73.5% | 93.3% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 36.0 | 3.79e-01 | 87.9% | 76.7% |
| 3658278 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 36.0 | 2.68e-01 | 72.0% | 80.9% |
| 3672263 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.87e-01 | 86.4% | 89.3% |
| 3760087 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 39.0 | 3.39e-01 | 81.8% | 88.8% |
D3
medium
residues 291-328_342-368
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13264.12 best | DUF4055 | 51.4 | 1.80e-13 | 100.0% | 53.6% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.80 | 37.0 | 3.52e-01 | 95.4% | 39.5% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.78 | 40.0 | 3.35e-01 | 98.5% | 31.7% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.77 | 39.0 | 2.76e-01 | 96.9% | 17.5% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.76 | 46.0 | 3.55e-01 | 92.3% | 29.9% |
| 2b4vA02 | 3.30.460.50 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.75 | 37.0 | 3.00e-01 | 96.9% | 26.1% |
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.71 | 41.0 | 3.36e-01 | 96.9% | 32.5% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.67 | 44.0 | 3.29e-01 | 96.9% | 28.9% |
| 5awwY00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.67 | 58.0 | 3.58e-01 | 100.0% | 41.3% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.62 | 42.0 | 3.28e-01 | 80.0% | 35.9% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 41.0 | 3.14e-01 | 80.0% | 35.3% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.58 | 39.0 | 2.99e-01 | 95.4% | 33.1% |
| 6wxrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.56 | 47.0 | 2.91e-01 | 98.5% | 51.2% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.55 | 47.0 | 2.89e-01 | 96.9% | 44.9% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.52 | 34.0 | 3.35e-01 | 84.6% | 60.6% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 2.46e-01 | 84.6% | 29.3% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 36.0 | 3.75e-01 | 81.5% | 84.7% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.51 | 37.0 | 3.26e-01 | 100.0% | 53.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4016474 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.84 | 43.0 | 2.98e-01 | 80.0% | 17.8% |
| 3479066 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.75 | 37.0 | 3.09e-01 | 96.9% | 28.2% |
| 4125982 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.74 | 38.0 | 2.69e-01 | 100.0% | 17.2% |
| 3720795 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 55.0 | 3.22e-01 | 100.0% | 10.4% |
| 5074440 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.72 | 36.0 | 2.78e-01 | 83.1% | 21.4% |
| 3769782 | 263.1.1.4 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT | 0.71 | 31.0 | 3.06e-01 | 89.2% | 38.2% |
| 4128922 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.69 | 61.0 | 3.69e-01 | 100.0% | 39.8% |
| 3409778 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 63.0 | 4.95e-01 | 100.0% | 81.5% |
| 4494181 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.69 | 60.0 | 4.66e-01 | 100.0% | 77.9% |
| 3946430 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.68 | 33.0 | 2.47e-01 | 90.8% | 18.1% |
| 4110642 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.68 | 59.0 | 3.63e-01 | 100.0% | 42.0% |
| 3980782 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.67 | 58.0 | 3.71e-01 | 100.0% | 25.1% |
| 4498493 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.65 | 56.0 | 3.49e-01 | 98.5% | 42.6% |
| 3494833 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.65 | 58.0 | 3.50e-01 | 100.0% | 25.8% |
| 4202993 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.65 | 57.0 | 3.47e-01 | 100.0% | 39.1% |
| 3575992 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 29.0 | 2.69e-01 | 78.5% | 30.6% |
| 3217396 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.64 | 58.0 | 3.59e-01 | 100.0% | 20.6% |
| 4853049 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.63 | 22.0 | 2.77e-01 | 78.5% | 47.5% |
| 4262617 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.62 | 53.0 | 3.38e-01 | 98.5% | 44.2% |
| 3214822 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 53.0 | 3.41e-01 | 98.5% | 20.7% |
| 3665261 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.59 | 49.0 | 3.42e-01 | 92.3% | 30.7% |
| 3826725 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.59 | 47.0 | 2.83e-01 | 86.2% | 13.8% |
| 2330410 | 3281.1.1.2 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N | 0.58 | 53.0 | 3.08e-01 | 100.0% | 13.1% |
| 4943280 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.57 | 31.0 | 2.59e-01 | 95.4% | 26.1% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 47.0 | 4.12e-01 | 93.8% | 61.1% |
| 1109690 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.56 | 49.0 | 2.95e-01 | 96.9% | 15.2% |
| 4610804 | 221.1.1.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd | 0.56 | 44.0 | 3.15e-01 | 90.8% | 83.3% |
| 3174376 | 109.4.1.3127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31194 | 0.55 | 46.0 | 2.90e-01 | 98.5% | 33.8% |
| 3226927 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 47.0 | 3.10e-01 | 98.5% | 33.3% |
| 3447934 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.55 | 40.0 | 3.51e-01 | 90.8% | 51.0% |
| 5005923 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.54 | 45.0 | 2.73e-01 | 95.4% | 13.9% |
| 4546878 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.54 | 45.0 | 2.73e-01 | 95.4% | 13.9% |
| 3636696 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.53 | 46.0 | 2.86e-01 | 100.0% | 57.8% |
| 4932382 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.51 | 38.0 | 2.87e-01 | 95.4% | 34.0% |
| 4998447 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.51 | 37.0 | 2.77e-01 | 96.9% | 31.2% |
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.51 | 47.0 | 3.11e-01 | 100.0% | 51.6% |
| 3878678 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.51 | 42.0 | 3.00e-01 | 100.0% | 85.4% |
| 3821663 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.51 | 41.0 | 3.21e-01 | 96.9% | 39.9% |
| 3990818 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.51 | 37.0 | 2.71e-01 | 96.9% | 30.3% |
| 4890201 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 2.49e-01 | 98.5% | 74.7% |
| 1680693 | 4034.1.1.1 ↗ | a+b complex topology › Sandwich domain in replication terminator protein (Tus) › Sandwich domain in replication terminator protein (Tus) › Sandwich domain in replication terminator protein (Tus) › Ter | 0.50 | 44.0 | 3.30e-01 | 100.0% | 70.2% |