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MW677525.1__QXN72399.1__RCSIMONEHASTD_70__00070

Bact-Vir

MW677525.1__QXN72399.1__RCSIMONEHASTD_70__00070

Identity

Accession:
MW677525 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 70.0 5.31e-01 100.0% 57.5%
2hekA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.66 52.0 3.44e-01 90.2% 29.2%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.82e-01 88.5% 79.0%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.65 58.0 3.80e-01 100.0% 61.8%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.11e-01 100.0% 50.0%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.63 50.0 3.02e-01 86.9% 19.4%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 3.44e-01 100.0% 22.9%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.62 55.0 4.16e-01 96.7% 47.8%
1af7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.53e-01 98.4% 97.4%
4ba0A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 43.0 2.75e-01 85.2% 24.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.58 46.0 3.18e-01 91.8% 47.5%
2wa0A02 1.10.10.1210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH2 motif 0.56 44.0 3.78e-01 93.4% 77.0%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.92e-01 93.4% 84.5%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.55 39.0 3.33e-01 77.0% 73.1%
4c0rA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 38.0 3.08e-01 73.8% 90.2%
4toiA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 44.0 3.33e-01 96.7% 53.4%
3bchA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 45.0 3.14e-01 90.2% 59.4%
1vi6C01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 41.0 3.05e-01 88.5% 50.0%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 44.0 3.58e-01 93.4% 47.1%
1a7jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 2.93e-01 95.1% 30.8%
4g0aA01 3.90.1400.10 Alpha Beta › Alpha-Beta Complex › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain 0.53 41.0 3.24e-01 88.5% 60.4%
1kutB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.38e-01 95.1% 52.8%
6a80A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 39.0 3.13e-01 80.3% 91.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.35e-01 85.2% 80.2%
4ak1A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.12e-01 73.8% 90.1%
5yxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 2.91e-01 72.1% 44.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514041 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.78 64.0 4.03e-01 90.2% 51.8%
5017852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 55.0 5.14e-01 77.0% 85.3%
3731212 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.73 52.0 4.64e-01 100.0% 54.1%
4999062 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.72 65.0 5.56e-01 100.0% 76.8%
4974747 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.70 60.0 4.96e-01 98.4% 65.2%
4933456 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 50.0 4.65e-01 78.7% 77.5%
3688563 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 51.0 3.30e-01 80.3% 47.8%
5074949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.05e-01 95.1% 86.7%
4985937 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.75e-01 100.0% 74.2%
4945461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.61e-01 88.5% 75.8%
5077394 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.67 58.0 4.75e-01 100.0% 61.7%
3201743 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.66 54.0 3.59e-01 88.5% 72.3%
5009810 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.66 51.0 4.72e-01 85.2% 81.2%
5051539 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 57.0 4.62e-01 96.7% 60.9%
4929718 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.73e-01 98.4% 69.5%
4972751 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 57.0 4.78e-01 98.4% 69.5%
3332887 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.65 47.0 3.86e-01 78.7% 79.2%
5031624 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 46.0 4.07e-01 73.8% 66.7%
5030872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 3.87e-01 82.0% 63.8%
3692615 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 47.0 3.25e-01 75.4% 77.4%
3280479 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.64 55.0 4.93e-01 100.0% 83.3%
3192245 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.64 51.0 4.03e-01 90.2% 65.2%
3283039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.14e-01 98.4% 60.0%
3834798 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.63 47.0 3.25e-01 80.3% 84.1%
4946594 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.32e-01 90.2% 72.0%
3242025 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 3.95e-01 73.8% 89.4%
4948782 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 43.0 4.12e-01 73.8% 80.0%
5073726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.53e-01 90.2% 85.9%
3574242 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.62 52.0 2.96e-01 96.7% 9.9%
3995615 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.62 54.0 3.72e-01 100.0% 67.0%
3950440 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.61 50.0 3.63e-01 95.1% 97.3%
3684974 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 52.0 2.96e-01 98.4% 35.0%
4601385 4167.1.1.1 beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.60 41.0 3.34e-01 72.1% 88.3%
4961252 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.58e-01 98.4% 78.7%
3431346 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.60 52.0 3.33e-01 98.4% 88.5%
4586962 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.59 46.0 3.80e-01 88.5% 72.5%
4365970 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.59 45.0 3.88e-01 88.5% 78.2%
3974773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.94e-01 88.5% 82.9%
4932765 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.58e-01 86.9% 67.1%
4643578 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 46.0 3.61e-01 86.9% 40.8%
4927049 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 47.0 4.11e-01 93.4% 80.0%
4929028 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.58 49.0 3.54e-01 100.0% 89.5%
3971354 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.58 50.0 3.55e-01 100.0% 89.5%
4023967 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.58 46.0 3.24e-01 93.4% 64.5%
3480546 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 51.0 3.27e-01 98.4% 64.2%
4512994 2007.6.1.1 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 0.55 44.0 3.20e-01 95.1% 65.2%
5015873 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.55 39.0 3.01e-01 88.5% 34.6%
3646165 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.55 40.0 3.49e-01 80.3% 70.0%
5005286 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.55 49.0 3.11e-01 100.0% 50.2%
5044829 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.07e-01 100.0% 85.0%
5047367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.33e-01 72.1% 83.3%
3487187 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 40.0 2.91e-01 78.7% 47.5%
1511065 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.53 43.0 3.72e-01 96.7% 80.6%
3518307 193.1.1.33 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH_CAMSAP2_N 0.53 43.0 3.38e-01 90.2% 90.0%
3270370 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.50 36.0 2.88e-01 77.0% 41.6%
D2 medium residues 153-214
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.15e-01 100.0% 93.8%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 42.0 2.90e-01 77.4% 92.2%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.38e-01 98.4% 87.1%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.70e-01 74.2% 75.8%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 38.0 2.32e-01 79.0% 52.8%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 38.0 2.31e-01 88.7% 11.4%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.51 45.0 3.81e-01 96.8% 95.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 32.0 3.30e-01 90.3% 68.4%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 34.0 2.93e-01 71.0% 96.3%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.50 41.0 3.67e-01 96.8% 65.3%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.22e-01 95.2% 71.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.37e-01 74.2% 75.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935838 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.63 52.0 3.62e-01 96.8% 45.9%
3932590 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 2.56e-01 100.0% 9.4%
3933800 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 2.69e-01 100.0% 14.5%
3483955 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.59 46.0 4.17e-01 95.2% 63.5%
3252862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 41.0 3.49e-01 77.4% 64.5%
3578532 109.2.1.5 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.56 48.0 3.09e-01 96.8% 36.7%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 42.0 4.17e-01 88.7% 76.9%
5049528 7601.1.1.2 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.56 43.0 2.74e-01 82.3% 61.0%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.55 37.0 2.53e-01 72.6% 19.1%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 42.0 4.15e-01 90.3% 76.9%
2124211 220.3.1.2 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.54 40.0 3.05e-01 82.3% 96.2%
3716107 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.54 38.0 3.75e-01 80.6% 72.7%
3193439 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 38.0 2.49e-01 77.4% 60.3%
4572290 109.2.1.59 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GtaA_6_Hairpin 0.53 44.0 2.79e-01 100.0% 87.4%
5038043 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.53 46.0 3.45e-01 100.0% 67.5%
3441818 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 37.0 3.88e-01 91.9% 85.5%
5007173 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.53 46.0 3.10e-01 96.8% 67.9%
3566423 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 43.0 3.04e-01 100.0% 50.2%
4275625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.51 36.0 3.70e-01 85.5% 80.0%
4952130 3714.1.1.1 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.51 34.0 2.36e-01 74.2% 19.1%
3939998 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.50 42.0 2.81e-01 96.8% 34.1%