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MW677525.1__QXN72402.1__RCSIMONEHASTD_73__00073
Bact-VirMW677525.1__QXN72402.1__RCSIMONEHASTD_73__00073
Identity
- Accession:
- MW677525 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
TaxID: 2835981
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-315
Domain cluster:
rep: MZ911962.1__WNV45434.1__X__00032__D4-47
D2
medium
residues 3-73
Domain cluster:
rep: MT118296.1__QIQ65283.1__19_00013__00013__D2-63
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.71 | 50.0 | 4.82e-01 | 74.6% | 85.2% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 48.0 | 4.62e-01 | 76.1% | 90.4% |
| 2v4jA02 | 3.30.70.2500 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 46.0 | 4.11e-01 | 73.2% | 66.3% |
| 1s5jA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.65 | 46.0 | 3.59e-01 | 74.6% | 73.9% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.65 | 49.0 | 4.15e-01 | 81.7% | 86.9% |
| 3aqpA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 49.0 | 3.78e-01 | 80.3% | 80.6% |
| 3nycA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.65 | 46.0 | 3.66e-01 | 76.1% | 49.3% |
| 2e44A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 44.0 | 4.36e-01 | 74.6% | 98.7% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.61 | 43.0 | 4.45e-01 | 74.6% | 89.6% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.61 | 43.0 | 4.05e-01 | 74.6% | 85.2% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 49.0 | 4.82e-01 | 88.7% | 98.7% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.60 | 42.0 | 3.82e-01 | 74.6% | 86.3% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.58 | 41.0 | 4.35e-01 | 74.6% | 100.0% |
| 7vcrA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.56 | 44.0 | 3.92e-01 | 87.3% | 71.2% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.78e-01 | 74.6% | 80.0% |
| 2b9wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 43.0 | 3.15e-01 | 88.7% | 91.0% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 33.0 | 2.84e-01 | 87.3% | 38.0% |
| 2hoxA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 40.0 | 2.92e-01 | 84.5% | 78.6% |
| 2q8kA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.78e-01 | 73.2% | 100.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 137107 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.71 | 50.0 | 4.74e-01 | 74.6% | 80.2% |
| 4964447 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.71 | 50.0 | 4.75e-01 | 74.6% | 81.2% |
| 4043865 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.70 | 50.0 | 4.71e-01 | 74.6% | 89.4% |
| 4985395 | 304.4.1.75 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD | 0.70 | 50.0 | 4.92e-01 | 74.6% | 96.0% |
| 5040784 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.69 | 44.0 | 5.01e-01 | 74.6% | 92.0% |
| 5063278 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.69 | 49.0 | 5.12e-01 | 74.6% | 93.8% |
| 3972144 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.69 | 49.0 | 3.48e-01 | 74.6% | 91.7% |
| 5011762 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.69 | 49.0 | 5.25e-01 | 74.6% | 96.7% |
| 5006766 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.68 | 48.0 | 5.13e-01 | 74.6% | 90.0% |
| 419749 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.67 | 48.0 | 4.46e-01 | 76.1% | 81.5% |
| 4941492 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.67 | 47.0 | 5.03e-01 | 74.6% | 95.0% |
| 4974988 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 48.0 | 4.83e-01 | 76.1% | 91.4% |
| 3208802 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.66 | 47.0 | 3.15e-01 | 74.6% | 42.8% |
| 2770666 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.66 | 50.0 | 3.93e-01 | 80.3% | 50.3% |
| 4131077 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.66 | 47.0 | 4.62e-01 | 74.6% | 92.0% |
| 3200904 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.66 | 47.0 | 4.69e-01 | 77.5% | 97.3% |
| 5082818 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.65 | 47.0 | 4.78e-01 | 76.1% | 90.0% |
| 4929350 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.65 | 47.0 | 4.52e-01 | 76.1% | 92.5% |
| 5062182 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.64 | 46.0 | 4.76e-01 | 74.6% | 92.3% |
| 4103289 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.64 | 45.0 | 3.06e-01 | 74.6% | 53.0% |
| 4478659 | 3435.1.1.3 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L | 0.64 | 45.0 | 3.01e-01 | 74.6% | 47.0% |
| 5011383 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.64 | 44.0 | 4.69e-01 | 74.6% | 85.0% |
| 3973395 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.64 | 45.0 | 4.79e-01 | 74.6% | 93.3% |
| 4957781 | 807.1.1.0 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) | 0.64 | 42.0 | 4.74e-01 | 74.6% | 98.0% |
| 3581763 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 45.0 | 4.58e-01 | 76.1% | 92.9% |
| 4964850 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.61 | 47.0 | 4.04e-01 | 87.3% | 87.2% |
| 4935957 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.61 | 43.0 | 4.25e-01 | 74.6% | 86.7% |
| 4794894 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.60 | 42.0 | 4.33e-01 | 73.2% | 100.0% |
| 4970115 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 42.0 | 4.27e-01 | 74.6% | 98.6% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.59 | 41.0 | 4.54e-01 | 74.6% | 98.2% |
| 4310314 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 41.0 | 4.50e-01 | 74.6% | 96.4% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.56 | 38.0 | 4.27e-01 | 74.6% | 100.0% |
| 4081421 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.55 | 36.0 | 4.04e-01 | 74.6% | 98.0% |
| 4199730 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 36.0 | 3.18e-01 | 74.6% | 45.7% |
| 2485647 | 304.168.1.0 ↗ | a+b two layers › Alpha-beta plaits | 0.55 | 38.0 | 4.08e-01 | 74.6% | 89.8% |
| 3247277 | 5069.1.3.99 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › NRF | 0.53 | 37.0 | 2.88e-01 | 74.6% | 35.0% |
| 4164704 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.52 | 38.0 | 3.18e-01 | 80.3% | 74.1% |
D3
medium
residues 134-205
Domain cluster:
representative