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MW677528.1__QXH25140.1__RCWATERBOI_49__00049

Bact-Vir

MW677528.1__QXH25140.1__RCWATERBOI_49__00049

Identity

Accession:
MW677528 ↗
Kingdom:
phage

Quality

57.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcWaterboi

TaxID: 2835983

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 584-660
PDB
D2 high residues 714-858
PDB
Domain cluster: rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18013.7 best Phage_lysozyme2 86.8 2.20e-24 95.9% 99.3%
D3 high residues 980-1020
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.65 42.0 4.26e-01 85.4% 65.0%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 46.0 2.98e-01 87.8% 53.8%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 46.0 3.76e-01 95.1% 45.5%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 42.0 2.99e-01 80.5% 27.9%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.57 41.0 2.74e-01 82.9% 75.7%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.56 41.0 3.08e-01 97.6% 67.8%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.55 42.0 2.99e-01 92.7% 61.6%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.55 43.0 3.10e-01 100.0% 45.9%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.55 41.0 2.90e-01 92.7% 67.7%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 37.0 3.05e-01 73.2% 78.6%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.51e-01 100.0% 56.1%
4kn7D01 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.54 37.0 2.72e-01 75.6% 24.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 45.0 3.71e-01 95.1% 52.0%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 39.0 2.66e-01 82.9% 44.8%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 2.79e-01 82.9% 46.7%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 39.0 2.41e-01 90.2% 36.5%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 42.0 2.62e-01 100.0% 77.4%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 38.0 2.56e-01 92.7% 23.3%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.51 38.0 2.49e-01 100.0% 58.3%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 40.0 2.54e-01 100.0% 81.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 42.0 2.75e-01 92.7% 47.9%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 2.94e-01 92.7% 66.9%
5i9eA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 43.0 3.17e-01 100.0% 77.9%
4qszA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 2.41e-01 100.0% 47.2%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 42.0 2.60e-01 100.0% 52.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785231 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 50.0 2.99e-01 100.0% 10.0%
3272533 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 57.0 3.37e-01 100.0% 54.5%
3599852 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.66 45.0 2.47e-01 92.7% 4.1%
4939277 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.63 50.0 3.45e-01 100.0% 48.2%
3721350 312.1.1.11 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N 0.62 41.0 2.78e-01 100.0% 16.0%
4964434 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 3.43e-01 90.2% 35.6%
4318504 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.60 47.0 3.24e-01 92.7% 42.4%
4028937 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.60 46.0 2.52e-01 95.1% 4.8%
3422289 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 40.0 2.87e-01 70.7% 56.7%
3518473 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 43.0 2.42e-01 82.9% 16.9%
3423775 601.16.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.59 39.0 2.73e-01 70.7% 82.6%
3710134 3110.1.1.2 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3-PglB_core 0.58 48.0 3.06e-01 97.6% 81.8%
4029364 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.58 49.0 2.71e-01 97.6% 30.0%
4446665 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.57 42.0 2.65e-01 85.4% 80.8%
3276327 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.57 44.0 2.98e-01 100.0% 77.5%
3176132 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 46.0 2.60e-01 87.8% 34.7%
3587130 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 39.0 3.43e-01 100.0% 42.9%
3595399 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.56 40.0 2.50e-01 80.5% 37.7%
4243212 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.55 44.0 2.42e-01 90.2% 5.9%
5058023 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 37.0 2.46e-01 97.6% 16.3%
5000750 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.55 46.0 2.83e-01 100.0% 74.6%
3802624 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.55 39.0 2.41e-01 87.8% 11.5%
3794379 3935.1.1.0 ↗ extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 0.54 38.0 3.72e-01 100.0% 68.0%
3594061 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.53 42.0 2.72e-01 100.0% 88.2%
3864427 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 42.0 2.68e-01 100.0% 85.2%
3523591 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 36.0 2.86e-01 73.2% 37.0%
3920677 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 42.0 2.63e-01 100.0% 89.3%
4342244 109.4.1.317 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med5 0.53 38.0 2.59e-01 82.9% 98.9%
3990199 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 39.0 2.37e-01 87.8% 20.0%
3508249 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.53 40.0 2.72e-01 97.6% 77.6%
3605458 309.1.1.16 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C 0.52 43.0 2.34e-01 97.6% 5.3%
4469646 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.52 40.0 2.37e-01 85.4% 53.5%
4030581 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.51 38.0 2.35e-01 100.0% 88.2%
3268142 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.51 42.0 2.58e-01 100.0% 91.9%
3601511 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 41.0 2.43e-01 92.7% 18.0%
3253857 3110.1.1.2 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3-PglB_core 0.51 39.0 2.60e-01 95.1% 97.6%
3517280 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.51 39.0 2.37e-01 95.1% 56.7%
137752 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 39.0 2.94e-01 92.7% 66.9%
4412985 327.10.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.50 32.0 2.62e-01 95.1% 28.9%
3628663 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.50 42.0 2.49e-01 100.0% 68.1%
D4 medium residues 18-79
PDB
D5 medium residues 221-430
PDB
D6 medium residues 431-503
PDB