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MW677529.1__QXN72727.1__RCZAHN_118__00118

Bact-Vir

MW677529.1__QXN72727.1__RCZAHN_118__00118

Identity

Accession:
MW677529 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcZahn

TaxID: 2835984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-118
PDB
Domain cluster: rep: NC_048830.1__YP_009854540.1__HWC86_gp09__00009__D32-106
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.73 48.0 3.84e-01 98.5% 34.4%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 28.0 2.25e-01 100.0% 20.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 45.0 4.50e-01 93.9% 79.4%
2cj9A01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.17e-01 93.9% 33.8%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 39.0 3.62e-01 87.9% 54.8%
3ibjA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 39.0 2.95e-01 71.2% 48.3%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 48.0 4.43e-01 100.0% 83.7%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.57 46.0 4.57e-01 100.0% 84.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.62e-01 72.7% 91.6%
1eu3A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 46.0 4.34e-01 92.4% 90.0%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 45.0 4.36e-01 100.0% 79.7%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 45.0 3.83e-01 90.9% 67.9%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.54 45.0 4.33e-01 97.0% 81.3%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.54 37.0 3.07e-01 72.7% 78.4%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.53 46.0 3.75e-01 97.0% 94.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.20e-01 74.2% 96.3%
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.53 37.0 3.72e-01 100.0% 72.5%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 47.0 4.37e-01 98.5% 85.2%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 46.0 4.60e-01 98.5% 95.7%
2f4iA02 2.40.50.420 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Envelope glycoprotein gp160, DUF2291, alpha/beta domain 0.52 42.0 3.63e-01 93.9% 63.5%
3x1lB02 3.30.1040.70 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.52 36.0 3.70e-01 95.5% 77.8%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 43.0 4.09e-01 100.0% 90.5%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 22.0 2.86e-01 83.3% 54.1%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 4.06e-01 100.0% 77.6%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 36.0 2.43e-01 100.0% 19.1%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 34.0 3.05e-01 92.4% 48.0%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 37.0 3.19e-01 92.4% 49.5%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 43.0 3.05e-01 100.0% 54.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2841824 4.1.1.114 ↗ beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.66 48.0 4.50e-01 78.8% 86.9%
3512849 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.62 50.0 5.19e-01 100.0% 95.0%
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.62 47.0 4.74e-01 81.8% 87.7%
3478704 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 40.0 4.06e-01 75.8% 67.7%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.94e-01 95.5% 55.2%
3887475 12.5.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FAM171A1-2-B_N 0.58 47.0 3.59e-01 92.4% 93.5%
4986577 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.58 46.0 3.88e-01 87.9% 51.8%
4937496 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.58 43.0 4.41e-01 100.0% 83.1%
3408648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.06e-01 89.4% 61.0%
4512779 75.1.1.2 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › CT_A_B 0.57 43.0 3.43e-01 83.3% 78.6%
4033000 75.1.1.2 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › CT_A_B 0.56 42.0 3.30e-01 81.8% 76.0%
3977606 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.92e-01 89.4% 65.0%
4263140 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 42.0 4.13e-01 81.8% 100.0%
3203939 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 50.0 4.91e-01 100.0% 94.3%
5050539 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 48.0 4.73e-01 97.0% 92.9%
3688595 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 49.0 3.81e-01 98.5% 47.8%
4938181 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.55 45.0 4.70e-01 98.5% 100.0%
3590743 304.3.1.14 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C 0.54 46.0 4.72e-01 98.5% 95.4%
3768329 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.29e-01 80.3% 52.8%
4407986 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 44.0 3.47e-01 90.9% 51.1%
4956135 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.53 45.0 4.69e-01 98.5% 100.0%
4953963 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 48.0 4.59e-01 100.0% 89.3%
3744190 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.53 43.0 3.57e-01 90.9% 60.0%
3701817 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 44.0 3.02e-01 100.0% 35.1%
5061601 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.94e-01 98.5% 83.8%
4969986 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.52 46.0 2.75e-01 100.0% 16.0%
5051914 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 45.0 4.48e-01 98.5% 97.1%
3704389 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.97e-01 92.4% 83.5%
4515863 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 35.0 3.02e-01 71.2% 50.0%
3451427 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 42.0 4.08e-01 100.0% 93.8%
None — 0.51 38.0 2.49e-01 86.4% 50.4%
3193786 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.51 43.0 3.49e-01 100.0% 63.6%
3946400 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.51 42.0 3.13e-01 93.9% 53.1%
4932407 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 41.0 3.99e-01 100.0% 91.3%
5056705 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 44.0 4.18e-01 100.0% 95.0%
4878500 5077.1.1.5 ↗ extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › PSI_PsaE 0.50 31.0 3.42e-01 92.4% 80.4%
3564088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.50e-01 90.9% 69.1%
4019328 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.50 40.0 3.18e-01 92.4% 92.0%