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MW677529.1__QXN72750.1__RCZAHN_141__00141

Bact-Vir

MW677529.1__QXN72750.1__RCZAHN_141__00141

Identity

Accession:
MW677529 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-118
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qw6D00 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.83 57.0 6.69e-01 74.6% 96.5%
3bgeA01 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.83 62.0 6.84e-01 78.0% 94.8%
4dhdA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 38.0 2.78e-01 76.3% 21.3%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.63 40.0 4.71e-01 71.2% 92.8%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.60 37.0 4.56e-01 71.2% 98.6%
1gaxA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 43.0 3.48e-01 75.4% 81.1%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.59 41.0 3.57e-01 71.2% 52.2%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.59 41.0 3.94e-01 70.3% 83.5%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 39.0 4.01e-01 76.3% 70.5%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 42.0 3.93e-01 76.3% 89.9%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 36.0 3.45e-01 93.2% 53.5%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.56 44.0 4.29e-01 84.7% 87.2%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 40.0 3.85e-01 73.7% 82.0%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 38.0 3.31e-01 71.2% 45.4%
4evfA01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.55 32.0 3.92e-01 72.9% 94.4%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 46.0 4.38e-01 97.5% 80.1%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.53 38.0 3.34e-01 74.6% 96.3%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 39.0 4.25e-01 76.3% 100.0%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 36.0 3.65e-01 70.3% 89.1%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.52 44.0 3.80e-01 93.2% 89.5%
8iprA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.51 38.0 2.86e-01 77.1% 83.6%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 35.0 2.67e-01 70.3% 45.2%
2y4tB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 36.0 2.68e-01 73.7% 32.9%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.50 39.0 3.73e-01 83.9% 87.9%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 37.0 3.61e-01 78.0% 92.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034776 138.1.1.4 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › MgsA_C 0.81 64.0 5.36e-01 81.4% 52.4%
4927882 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.67 46.0 4.79e-01 70.3% 88.2%
143387 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.61 43.0 4.38e-01 71.2% 79.6%
4419510 604.12.1.3 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ 0.58 43.0 3.69e-01 77.1% 84.2%
3975382 601.13.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS 0.58 43.0 4.15e-01 78.8% 87.4%
5078543 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 40.0 3.79e-01 77.1% 80.0%
3227167 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.54 40.0 3.08e-01 78.0% 47.9%
3548485 101.3.1.0 alpha arrays › HTH › XPC-binding domain › XPC-binding domain 0.54 40.0 2.91e-01 79.7% 91.0%
3632535 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.54 39.0 3.82e-01 76.3% 76.9%
3710139 604.13.1.0 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.53 37.0 3.69e-01 86.4% 68.0%
3559508 109.4.1.2297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, PF29386, PF29407 0.53 42.0 2.84e-01 85.6% 41.6%
5073605 140.1.1.5 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.53 39.0 3.37e-01 75.4% 75.6%
3403154 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.54e-01 79.7% 29.0%
3202137 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 3.60e-01 78.8% 100.0%
3231382 5001.1.1.27 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre 0.50 43.0 3.14e-01 92.4% 76.9%
3601188 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 38.0 3.17e-01 81.4% 80.0%
D2 high residues 123-228
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 49.0 3.38e-01 80.2% 35.2%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.63 44.0 4.26e-01 71.7% 86.6%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 40.0 4.44e-01 97.2% 84.3%
1x5bA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 47.0 4.34e-01 84.0% 72.6%
3l9tA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.59 45.0 4.38e-01 80.2% 98.3%
1gw5A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 43.0 2.76e-01 78.3% 20.5%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 44.0 3.81e-01 81.1% 72.8%
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 4.18e-01 85.8% 69.3%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 41.0 4.06e-01 73.6% 98.2%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.56 39.0 3.85e-01 71.7% 90.3%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 43.0 4.10e-01 88.7% 71.2%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 3.68e-01 86.8% 59.0%
5t3wA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 43.0 4.01e-01 89.6% 67.9%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 41.0 3.78e-01 84.0% 74.3%
6igxD01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 45.0 3.41e-01 95.3% 61.1%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 42.0 3.41e-01 88.7% 81.3%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.52 39.0 3.22e-01 78.3% 72.2%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 37.0 3.15e-01 78.3% 87.7%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 3.72e-01 85.8% 92.5%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 43.0 3.49e-01 97.2% 78.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483099 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 42.0 4.35e-01 95.3% 73.0%
None 0.62 47.0 2.90e-01 82.1% 49.6%
3392974 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.86e-01 85.8% 68.0%
3603102 109.4.1.623 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.61 44.0 4.21e-01 84.9% 64.8%
3601731 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 2.90e-01 89.6% 58.7%
3514289 109.4.1.159 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ELMO_ARM 0.60 46.0 3.62e-01 80.2% 64.1%
3446493 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 4.43e-01 87.7% 86.2%
3605318 109.4.1.2084 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7051 0.60 48.0 3.91e-01 85.8% 85.6%
3996389 109.4.1.159 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ELMO_ARM 0.60 44.0 3.46e-01 77.4% 61.3%
3171905 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.59 44.0 3.57e-01 81.1% 53.2%
3785141 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.77e-01 88.7% 64.5%
3677367 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 3.41e-01 77.4% 65.0%
5016389 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 4.07e-01 84.0% 88.1%
3662137 109.4.1.628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.54 42.0 3.17e-01 83.0% 67.2%
3318780 109.4.1.843 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.54 47.0 3.69e-01 99.1% 50.2%
3506951 109.4.1.33 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT 0.53 45.0 3.99e-01 91.5% 76.1%
3645609 109.4.1.121 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mo25 0.53 44.0 3.17e-01 92.5% 53.1%
3411467 633.23.1.42 alpha bundles › Bromodomain-like › Claudin › Claudin › PF28643 0.53 44.0 3.24e-01 91.5% 61.7%
4311303 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.62e-01 82.1% 58.7%
3373656 109.4.1.1146 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.52 40.0 3.69e-01 80.2% 68.9%
3711970 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.24e-01 99.1% 77.7%
D3 high residues 248-370
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 31.0 3.66e-01 74.8% 69.4%
3b8cA01 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.59 49.0 3.56e-01 91.1% 75.6%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 37.0 3.91e-01 87.8% 71.4%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 47.0 4.46e-01 92.7% 75.2%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 42.0 4.22e-01 97.6% 77.2%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 31.0 3.05e-01 81.3% 48.9%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.54 39.0 3.18e-01 75.6% 93.0%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.52 40.0 4.03e-01 82.1% 99.2%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 27.0 3.13e-01 100.0% 70.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3760145 106.1.1.8 alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.61 44.0 4.19e-01 97.6% 62.7%
3564576 106.1.1.8 alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.61 45.0 4.28e-01 97.6% 64.7%
3654557 609.1.1.1 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.59 42.0 4.13e-01 73.2% 70.0%
5077029 5053.1.1.1 alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC 0.56 44.0 3.04e-01 85.4% 79.1%
4198408 5054.1.1.7 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.53 35.0 3.43e-01 93.5% 59.3%
3980445 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 37.0 3.30e-01 74.8% 96.8%
3924926 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 31.0 3.40e-01 87.8% 74.0%
4587243 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 38.0 3.27e-01 78.0% 88.2%
4022968 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.50 37.0 3.06e-01 75.6% 63.2%