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MW679410.1__QVW28400.1__X__00258

Bact-Vir

MW679410.1__QVW28400.1__X__00258

Identity

Accession:
MW679410 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Dhakavirus› Escherichia_phage_C6

TaxID: 2831681

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-58
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF28596.1 best Caudo_TAP_N 46.4 3.90e-12 98.2% 77.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 35.0 3.81e-01 98.2% 84.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.82e-01 94.7% 80.4%
2pm9A02 2.20.25.400 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 28.0 3.17e-01 94.7% 83.3%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 27.0 2.70e-01 96.5% 40.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 31.0 3.08e-01 87.7% 43.3%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 30.0 3.08e-01 87.7% 47.3%
2841823 4.1.1.114 ↗ beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.53 29.0 2.96e-01 87.7% 46.4%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.51 39.0 3.75e-01 93.0% 72.3%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.50 30.0 2.68e-01 96.5% 37.8%
3391558 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 33.0 3.02e-01 93.0% 50.0%
D2 medium residues 91-180
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.77 57.0 4.78e-01 77.8% 77.2%
4akvA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 50.0 3.88e-01 75.6% 75.8%
3b6hA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 52.0 3.23e-01 78.9% 26.0%
3i1aA03 1.20.58.840 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 4.39e-01 73.3% 72.4%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.65 55.0 4.55e-01 92.2% 69.4%
4im9B00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.64 52.0 4.49e-01 86.7% 92.6%
3akaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 50.0 4.08e-01 83.3% 91.4%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 44.0 3.82e-01 74.4% 92.5%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 42.0 3.91e-01 74.4% 91.4%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 41.0 3.57e-01 74.4% 55.8%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 45.0 3.69e-01 86.7% 87.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 45.0 4.22e-01 92.2% 72.8%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.54 38.0 4.21e-01 73.3% 98.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4019714 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.78 57.0 5.12e-01 75.6% 64.2%
3842812 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.72 44.0 3.23e-01 81.1% 25.6%
3975852 192.8.1.466 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Caudo_TAP 0.71 48.0 5.55e-01 71.1% 96.9%
4010637 3809.1.1.2 ↗ alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP 0.70 50.0 5.58e-01 74.4% 98.6%
4009505 7079.1.1.1 ↗ a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP 0.70 49.0 5.44e-01 72.2% 95.7%
4007897 3809.1.1.2 ↗ alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP 0.70 49.0 5.44e-01 72.2% 95.7%
3233973 633.6.1.21 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1, ACDH-11_C 0.69 62.0 4.31e-01 97.8% 83.5%
3793073 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 51.0 4.77e-01 77.8% 70.9%
3979204 605.2.1.8 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Caudo_TAP 0.68 50.0 5.46e-01 82.2% 93.3%
4016083 601.1.2.72 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › SesA 0.67 52.0 4.18e-01 81.1% 96.4%
4521202 160.1.1.3 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C 0.66 45.0 4.78e-01 71.1% 100.0%
1893629 160.1.1.3 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C 0.65 52.0 5.55e-01 85.6% 98.7%
5076982 611.2.1.0 ↗ alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.64 53.0 5.01e-01 87.8% 99.0%
3986542 192.15.1.109 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Caudo_TAP 0.64 48.0 4.99e-01 81.1% 100.0%
2583940 601.7.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Csm6_HEPN 0.63 42.0 3.46e-01 70.0% 70.7%
3722464 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.79e-01 88.9% 67.7%
3705545 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.59 49.0 3.98e-01 91.1% 76.0%
3484519 633.10.1.22 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › SCAMP 0.59 48.0 3.97e-01 87.8% 66.3%
4961640 5001.1.1.292 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.59 49.0 3.68e-01 93.3% 49.6%
5080554 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.57 41.0 3.68e-01 74.4% 75.2%
3650446 2004.1.1.364 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.57 52.0 3.16e-01 100.0% 34.5%
3362890 7519.1.1.0 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit 0.55 41.0 4.07e-01 78.9% 73.7%
3215073 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 38.0 4.09e-01 70.0% 84.0%
3718737 633.33.1.0 ↗ alpha bundles › Bromodomain-like › Rogdi › Rogdi 0.54 43.0 3.07e-01 90.0% 26.5%
3420093 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.52 42.0 2.99e-01 86.7% 76.7%