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MW735835.1__QTH80351.1__PA10_00151__00151

Bact-Vir

MW735835.1__QTH80351.1__PA10_00151__00151

Identity

Accession:
MW735835 ↗
Kingdom:
phage

Quality

59.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_pPa_SNUABM_DT01

TaxID: 2820398

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
D2 high residues 187-262
PDB
Domain cluster: rep: RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00544__D2-75
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.84 66.0 4.95e-01 100.0% 37.1%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 59.0 4.73e-01 100.0% 40.4%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 63.0 4.77e-01 100.0% 37.3%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 68.0 4.96e-01 100.0% 37.9%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 60.0 4.59e-01 100.0% 36.3%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 63.0 5.05e-01 100.0% 44.8%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 64.0 4.80e-01 100.0% 39.6%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 61.0 4.64e-01 100.0% 39.2%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.70 42.0 4.36e-01 73.7% 63.9%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 3.97e-01 100.0% 44.1%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 37.0 3.47e-01 73.7% 41.9%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.67 53.0 4.30e-01 100.0% 44.9%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 41.0 4.14e-01 90.8% 68.8%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 44.0 4.53e-01 96.1% 80.6%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.61 39.0 3.50e-01 100.0% 47.2%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 29.0 3.60e-01 96.1% 81.4%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 33.0 3.86e-01 94.7% 85.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.23e-01 75.0% 94.2%
2ph5A02 3.30.360.30 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like 0.55 40.0 2.75e-01 77.6% 92.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 38.0 4.06e-01 100.0% 90.3%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.54 47.0 4.70e-01 94.7% 94.9%
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.53 46.0 4.66e-01 94.7% 98.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.54e-01 86.8% 94.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 47.0 4.53e-01 100.0% 96.6%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.66e-01 98.7% 82.5%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.51 45.0 4.50e-01 94.7% 94.9%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 43.0 4.26e-01 100.0% 98.7%
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 39.0 3.92e-01 98.7% 82.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.92 66.0 5.08e-01 100.0% 36.8%
4170121 69.1.1.11 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.90 68.0 5.03e-01 100.0% 34.7%
5028312 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.90 63.0 5.00e-01 100.0% 39.3%
5078549 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.89 67.0 5.09e-01 100.0% 37.5%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 66.0 5.13e-01 100.0% 39.4%
4940451 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 65.0 5.27e-01 100.0% 44.4%
4993480 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 58.0 4.47e-01 100.0% 33.1%
4975578 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 64.0 4.23e-01 100.0% 21.5%
5052154 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 65.0 4.90e-01 100.0% 36.4%
5028788 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 64.0 5.08e-01 100.0% 42.1%
4948016 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 59.0 4.60e-01 100.0% 36.0%
4992651 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 65.0 4.95e-01 100.0% 37.0%
4978263 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 65.0 4.95e-01 100.0% 37.0%
4993813 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 65.0 4.94e-01 100.0% 38.1%
4982797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 64.0 5.10e-01 100.0% 42.1%
4983458 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 66.0 5.02e-01 100.0% 38.2%
5030213 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.84 66.0 5.17e-01 100.0% 42.0%
5012957 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 67.0 4.95e-01 100.0% 36.6%
5029540 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 60.0 4.61e-01 100.0% 35.6%
4054994 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 62.0 4.70e-01 100.0% 35.3%
3604113 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 61.0 4.82e-01 100.0% 40.7%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 64.0 4.87e-01 100.0% 38.2%
3603291 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 61.0 4.58e-01 100.0% 34.3%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 65.0 4.91e-01 100.0% 38.2%
4983616 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 68.0 5.06e-01 100.0% 39.4%
4600944 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 64.0 4.82e-01 100.0% 37.1%
4487998 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 64.0 4.81e-01 100.0% 37.1%
164902 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 60.0 4.49e-01 100.0% 33.9%
4943244 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 60.0 4.57e-01 100.0% 35.9%
4997604 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 57.0 4.32e-01 100.0% 33.5%
3861422 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.76 62.0 4.57e-01 100.0% 35.3%
4342207 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 64.0 5.05e-01 100.0% 47.3%
5029355 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 59.0 4.67e-01 100.0% 43.3%
4993128 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 66.0 5.05e-01 100.0% 45.6%
4946209 69.1.1.18 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.73 68.0 4.85e-01 100.0% 65.9%
4943231 69.1.1.16 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › ATP-synt_ab 0.73 67.0 4.93e-01 100.0% 41.7%
4392318 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 66.0 4.84e-01 100.0% 45.4%
3604383 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 66.0 4.62e-01 100.0% 56.7%
4993927 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 66.0 5.14e-01 100.0% 52.7%
4629526 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 66.0 4.24e-01 100.0% 70.6%
5014854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.69 65.0 4.51e-01 100.0% 49.8%
3304610 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.63 53.0 3.86e-01 89.5% 87.4%
3332679 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.61 52.0 3.73e-01 89.5% 88.0%
4084680 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.60 51.0 4.92e-01 100.0% 82.4%
3969485 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.58 54.0 4.74e-01 100.0% 95.5%
3587995 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.58 55.0 4.60e-01 100.0% 84.2%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 33.0 2.70e-01 85.5% 31.7%
145704 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.52 33.0 3.63e-01 98.7% 82.8%
1612800 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.51 45.0 4.17e-01 96.1% 79.2%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 3.72e-01 73.7% 91.4%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.50 32.0 3.55e-01 98.7% 83.3%
3954914 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.50 38.0 3.29e-01 84.2% 72.3%
D3 medium residues 84-186
PDB