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MW748992.2__QUE30132.1__X__00006

Bact-Vir

MW748992.2__QUE30132.1__X__00006

Identity

Accession:
MW748992 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_ValP_IME234

TaxID: 1852639

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-156
PDB
Domain cluster: rep: NC_020842.1__YP_007673413.1__CGPG_00031__00031__D20-185
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.79 68.0 7.09e-01 100.0% 98.3%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.77 72.0 6.71e-01 100.0% 98.7%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.76 72.0 6.59e-01 100.0% 82.6%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.75 70.0 6.48e-01 100.0% 95.5%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.70 54.0 5.81e-01 100.0% 95.3%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.68 62.0 5.19e-01 100.0% 97.2%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.67 62.0 5.82e-01 100.0% 96.6%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.67 63.0 5.23e-01 100.0% 93.1%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.67 59.0 5.86e-01 96.8% 95.5%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.67 48.0 3.94e-01 100.0% 42.4%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.67 57.0 5.80e-01 99.2% 94.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.66 58.0 6.01e-01 100.0% 98.3%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.66 60.0 4.58e-01 100.0% 99.7%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.66 60.0 4.55e-01 100.0% 99.3%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 54.0 5.06e-01 99.2% 71.6%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 59.0 5.40e-01 100.0% 91.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 32.0 4.42e-01 100.0% 98.3%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.64 59.0 4.38e-01 100.0% 89.0%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 56.0 4.29e-01 100.0% 91.1%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 57.0 4.45e-01 100.0% 98.9%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.63 57.0 4.19e-01 97.6% 97.5%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 51.0 4.51e-01 97.6% 59.4%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 55.0 4.92e-01 99.2% 68.0%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.62 55.0 3.84e-01 100.0% 96.3%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 54.0 4.17e-01 96.0% 91.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 56.0 5.23e-01 100.0% 90.2%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.60 53.0 3.84e-01 96.0% 98.2%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.58 53.0 4.24e-01 100.0% 92.1%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 52.0 3.84e-01 100.0% 97.9%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 50.0 3.61e-01 96.8% 96.7%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.57 51.0 3.59e-01 98.4% 93.6%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 50.0 3.58e-01 96.8% 95.4%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 42.0 4.01e-01 77.4% 83.2%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 49.0 4.65e-01 98.4% 79.7%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 4.23e-01 97.6% 75.8%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 4.39e-01 96.0% 76.9%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 4.51e-01 97.6% 77.6%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 3.82e-01 80.6% 89.9%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.87e-01 88.7% 83.7%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.54 40.0 3.78e-01 78.2% 87.0%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 49.0 3.46e-01 100.0% 96.4%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 49.0 3.59e-01 100.0% 95.9%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.54 35.0 3.37e-01 100.0% 57.9%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 48.0 3.62e-01 99.2% 97.7%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 47.0 3.34e-01 100.0% 97.3%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 47.0 3.53e-01 98.4% 93.4%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 41.0 3.43e-01 100.0% 48.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.47e-01 75.0% 70.6%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 43.0 2.82e-01 93.5% 41.6%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 45.0 4.00e-01 96.0% 91.3%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 45.0 3.59e-01 95.2% 81.7%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 4.14e-01 96.8% 79.2%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.51 41.0 2.86e-01 84.7% 46.5%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 4.14e-01 96.8% 96.9%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 42.0 3.95e-01 91.1% 87.7%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 42.0 4.01e-01 93.5% 78.8%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 41.0 3.44e-01 89.5% 51.3%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 41.0 3.42e-01 89.5% 50.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4063158 5084.1.1.7 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP 0.83 78.0 6.99e-01 100.0% 83.0%
4172098 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.77 72.0 6.04e-01 100.0% 93.5%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.77 62.0 6.43e-01 100.0% 90.4%
5081327 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.70 58.0 6.11e-01 100.0% 98.2%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 56.0 5.00e-01 100.0% 65.1%
3980865 5084.1.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.64 58.0 4.53e-01 100.0% 89.6%
4437932 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 57.0 4.24e-01 99.2% 88.5%
4447762 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.64 58.0 5.38e-01 100.0% 91.2%
4191031 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.64 56.0 4.12e-01 93.5% 91.3%
4677413 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.63 56.0 4.24e-01 99.2% 89.1%
3164364 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 57.0 4.36e-01 100.0% 85.1%
4304754 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 57.0 4.29e-01 100.0% 88.2%
4379627 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 56.0 4.21e-01 99.2% 91.0%
4450761 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 56.0 4.08e-01 100.0% 81.0%
4278291 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 51.0 3.78e-01 87.9% 85.9%
885 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 54.0 4.17e-01 96.0% 91.0%
3429047 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.61 56.0 4.20e-01 100.0% 99.0%
3165307 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.61 55.0 3.79e-01 100.0% 98.2%
4982195 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 38.0 3.80e-01 94.4% 58.5%
4162922 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 54.0 4.12e-01 100.0% 90.6%
4005087 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.60 53.0 4.38e-01 99.2% 91.8%
3979319 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 53.0 4.10e-01 100.0% 93.9%
5009499 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.59 47.0 4.61e-01 99.2% 77.8%
3942551 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.58 53.0 3.62e-01 99.2% 98.6%
4670451 5084.5.4.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 0.57 51.0 3.80e-01 99.2% 88.5%
3385752 5084.5.4.7 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF2860 0.57 48.0 3.70e-01 91.1% 90.0%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.57 48.0 4.66e-01 97.6% 82.2%
4075543 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 53.0 3.92e-01 100.0% 94.4%
3288669 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.57 47.0 4.33e-01 89.5% 98.8%
1716664 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.56 41.0 2.84e-01 75.8% 34.2%
5009503 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.55 46.0 4.42e-01 99.2% 78.6%
3334482 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.55 50.0 4.44e-01 99.2% 88.6%
5011158 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.55 49.0 4.65e-01 99.2% 82.6%
4964630 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 46.0 4.38e-01 99.2% 76.9%
4458963 5084.5.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.55 50.0 3.59e-01 99.2% 98.3%
3840092 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.55 49.0 3.55e-01 99.2% 98.3%
3287036 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.54 45.0 4.06e-01 89.5% 97.6%
3961758 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 47.0 4.47e-01 99.2% 80.0%
3969139 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.54 48.0 3.33e-01 100.0% 97.5%
3593584 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 48.0 3.76e-01 99.2% 55.4%
4668983 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.54 44.0 4.09e-01 90.3% 83.1%
6336 331.13.1.1 ↗ a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779 0.54 35.0 2.95e-01 100.0% 39.5%
3974137 5084.5.1.69 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › B-barrel_PelB_C 0.53 43.0 3.27e-01 88.7% 94.0%
1806543 5084.5.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel 0.53 48.0 3.66e-01 100.0% 97.2%
1734925 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.53 47.0 3.34e-01 100.0% 97.3%
3944979 5084.5.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.52 44.0 3.64e-01 91.1% 60.0%
3839826 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.52 43.0 3.11e-01 91.9% 62.9%
3281686 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.52 43.0 3.96e-01 91.9% 98.2%
4025861 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.51 42.0 3.86e-01 90.3% 81.2%
3405242 5084.5.1.37 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.51 43.0 3.77e-01 96.0% 61.2%
4966638 881.1.1.44 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.51 43.0 3.80e-01 95.2% 75.4%
3288437 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.51 45.0 4.26e-01 97.6% 82.0%
5040587 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.50 44.0 4.13e-01 98.4% 77.4%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.50 43.0 3.74e-01 93.5% 67.6%
3303563 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.50 42.0 3.89e-01 92.7% 73.8%